DRSC/TRiP Functional Genomics Resources

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Protein Alignment ItgaPS4 and Itga1

DIOPT Version :9

Sequence 1:NP_611025.2 Gene:ItgaPS4 / 36693 FlyBaseID:FBgn0034005 Length:1069 Species:Drosophila melanogaster
Sequence 2:NP_001028400.2 Gene:Itga1 / 109700 MGIID:96599 Length:1179 Species:Mus musculus


Alignment Length:1060 Identity:242/1060 - (22%)
Similarity:416/1060 - (39%) Gaps:247/1060 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    93 IDTKGNYKGMPNDGLLTAKNKDFRWLGGA-----------MDGGTRDS-----------DKFLVC 135
            |..:|..:.|...|:.||:.:.|....||           .||.:.|:           |:.:  
Mouse   240 IGRRGGLQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDNYRLKQVIQDCEDENI-- 302

  Fly   136 APRFYSINNENDYNNGMCYWLSDTPKNID-----STEVMEKWPLRIEKKQVL------------- 182
              :.:||.....||.|..    .|.|.::     ::|..||....:..:..|             
Mouse   303 --QRFSIAILGHYNRGNL----STEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKALGERIFA 361

  Fly   183 --KLADTNLIPY-YSMGELGLSAHVSDDNSKLLMGAPGIDQWKGSVHLKQE----VPSIKTSSGR 240
              ..||.:...: ..|.:.|.|||.|.|  .:::||.|...|.|:|.:::.    :|.       
Mouse   362 LEATADQSAASFEMEMSQTGFSAHYSQD--WVMLGAVGAYDWNGTVVMQKANQIVIPH------- 417

  Fly   241 QRRGMNTNRKCNECNPEPKNFGQEEFSYFGYAVSSGYFDSSNLSTVLYVATAPRGNNQFGEAYIF 305
                 ||.     ...||....:...||.||.|:|......    |||:|..||.|:. |:..|:
Mouse   418 -----NTT-----FQTEPTKMNEPLASYLGYTVNSATIPGD----VLYIAGQPRYNHT-GQVVIY 467

  Fly   306 DIYEDSIYKYHEFRGNHFGEYFGYSVLAEDLNGDGKTD-VIISAPLYALRNSYDDGAIYVF-INK 368
            .:.:..:.......|...|.|||..:...|::.|..|| :::.||:|......:.|.:||: :|:
Mouse   468 KMEDGDVNILQTLSGEQIGSYFGSVLTTIDIDKDSYTDLLLVGAPMYMGTEKEEQGKVYVYAVNQ 532

  Fly   369 GSFTFE---ERIIRSPAGS---------------GGRFGTTLSRIGDINKDGYNDVAVGAPFAGN 415
            ..|.::   |.|.::...|               |.||||.::.:.|:|.||:|||.:|||...:
Mouse   533 TRFEYQMSLEPIKQTCCSSLKDNSCTKENKNEPCGARFGTAVAAVKDLNVDGFNDVVIGAPLEDD 597

  Fly   416 --GSVFIYLGSENGLRDPPSQCLDAPSQQPSKYGSYMFGHGLSRGSDIDGNGFNDFAIGAPNAEA 478
              |:|:||.||...:|...:|.:  ||....|...: ||..:....|::|:|..|..||.....|
Mouse   598 HAGAVYIYHGSGKTIRKEYAQRI--PSGGDGKTLKF-FGQSIHGEMDLNGDGLTDVTIGGLGGAA 659

  Fly   479 VYLYRAYPVVKIHAIIKPKLQNVNPEEERV--------NITVCY--RLSSKSDSKAKALMEQELV 533
            ::..|...|||:....:|...|:..:..||        |.|:|:  :|.||.||    :.|.:|.
Mouse   660 LFWARDVAVVKVTMNFEPNKVNIQKKNCRVEGKETVCINATMCFHVKLKSKEDS----VYEADLQ 720

  Fly   534 IRIDIDTKSKIKLAVFD--EEHGSQMSFKAKAFHEEICSEFQIEM-DKRAKFTPIALEMQYELSK 595
            .|:.:|:..:|..:.|.  :|...|.:...:   |..|......| ||......:.:.:.:.|:.
Mouse   721 YRVTLDSLRQISRSFFSGTQERRIQRNLTVR---ESECIRHSFYMLDKHDFQDSVRVTLDFNLTD 782

  Fly   596 KIPNSGDFCEDCAVVDPAEPKFVTEYITFNTGCAT-DVCVAD--LKISCINASSTLVLGTTAVLR 657
              |.:|      .|:|.|.|..|..:|.|...|.. :.||:|  |.:|....:..:|........
Mouse   783 --PENG------PVLDDALPNSVHGHIPFAKDCGNKERCVSDLTLDVSTTEKNLLIVRSQNDKFN 839

  Fly   658 LTYNITNNGEFAYHPKFSVTNSAGLSLAQV----PGNCKVNEAVMVCDLNHGQRMAKGDTDSLTI 718
            ::..:.|.|:.||:.:..|..|..|..:.:    ..:|:.|:.: .|.:.: ..:..||..:..|
Mouse   840 VSLTVKNKGDSAYNTRTVVQYSPNLIFSGIEEIQKDSCESNQNI-TCRVGY-PFLRTGDVVNFKI 902

  Fly   719 SFDVRQLRGRSLEIQAEV-LSARDESNPE-----NNKLTNVLSLREKADIYVSGVQTNDHVVLKE 777
            .|   |.....|...|.: |||..:|...     :|::...:.::.:..:......:..|:.:..
Mouse   903 IF---QFNTSHLSENAIIHLSATSDSEEPLESLYDNEVNISIPVKYEVGLQFYSSASEHHISVAA 964

  Fly   778 SPYTAEVVN-----------YYEIKSHG----PS-----TLENLTVSLYIPVAYKT----PDSTN 818
            :....|::|           :|.|:..|    |.     :..|||...| ||.|.|    .|:.|
Mouse   965 NETVPELINSTKDIGDEINVFYTIRKRGHFPMPELRLAISFPNLTSDGY-PVLYPTGWSSSDNVN 1028

  Fly   819 VKHIVTSSP-KIQSKYAHKIMPINFIDQNNALANNFAIDHDQSTLLFSATPQHENVGNLSGIVEQ 882
            .:......| .|.|   .|.|.|:                 :|.:|...|.|..:...::.|   
Mouse  1029 CRPRSLEDPLGINS---GKKMTIS-----------------KSEVLKRGTIQDCSTCKIATI--- 1070

  Fly   883 NPSISLLNEDL-PVNNTLVL------NCQDTNVTLCVPVEIRLENGLQLKPEELMNMTVSFTVNL 940
              :..||..|: .||.:|:|      ....:::.|.:..|::.||.         ::|:| :.|.
Mouse  1071 --TCHLLPSDVSQVNVSLILWKPTFIKAHFSSLNLTIRGELQSENS---------SLTLS-SSNR 1123

  Fly   941 KDADDIWEYFVIQTDLKVHKIGDPTLSSFTIEKKIESNVICKHAEIAIWKIIVSVIVGILVFSAA 1005
            |.          :..:::.|.|.|                   ..:.:|.|::|...|:|:....
Mouse  1124 KR----------ELAIQISKDGLP-------------------GRVPLWVILLSAFAGLLLLMLL 1159

  Fly  1006 TYALYKRGFFKRAIKDDLKQ 1025
            ..||:|.|||||.:|..:::
Mouse  1160 ILALWKIGFFKRPLKKKMEK 1179

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ItgaPS4NP_611025.2 VCBS 335..408 CDD:290251 27/92 (29%)
Int_alpha 384..434 CDD:214549 23/66 (35%)
Int_alpha 447..>492 CDD:214549 13/44 (30%)
Integrin_alpha2 484..808 CDD:285619 78/369 (21%)
Itga1NP_001028400.2 FG-GAP 1. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 30..91
FG-GAP 2. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 101..160
vWA_integrins_alpha_subunit 171..351 CDD:238746 24/118 (20%)
FG-GAP 3. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 365..417 15/53 (28%)
FG-GAP 4. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 422..474 17/56 (30%)
FG-GAP 5. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 475..537 17/61 (28%)
Int_alpha 485..>528 CDD:214549 13/42 (31%)
FG-GAP 6. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 556..614 21/57 (37%)
Int_alpha 567..620 CDD:214549 23/52 (44%)
FG-GAP 7. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 618..678 17/62 (27%)
Integrin_alpha2 663..1045 CDD:285619 88/405 (22%)
GFFKR motif 1167..1171 3/3 (100%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167832055
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23220
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.840

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