DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ItgaPS4 and itga9

DIOPT Version :9

Sequence 1:NP_611025.2 Gene:ItgaPS4 / 36693 FlyBaseID:FBgn0034005 Length:1069 Species:Drosophila melanogaster
Sequence 2:XP_002940293.3 Gene:itga9 / 100494771 XenbaseID:XB-GENE-994231 Length:1034 Species:Xenopus tropicalis


Alignment Length:1138 Identity:276/1138 - (24%)
Similarity:474/1138 - (41%) Gaps:248/1138 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 AYNISPYPNSVLNFPELEGNRRSSYFGFSLV----IREKSIMVAAPRANSSLEAQRNISEPGVIF 78
            :||:.      |:.|.:......|:||:|::    ...:.::|.||:|:|...:  :|..||.:|
 Frog    28 SYNVD------LDHPVVFRGPNGSFFGYSVLEHYHDETRWVLVGAPKADSRYSS--SIKTPGAVF 84

  Fly    79 RCYFESGNNCSPYNIDT-KGNYKGMPNDGLLTAKNKDFRWLGGAMDGGTRDSDKFLVCAPRFYSI 142
            :|...|..|.|...:|. :||.:| ...|.....:::..|:|..:....:.:...|.||.|:.:|
 Frog    85 KCRVHSNPNKSCTELDLGRGNSRG-TRCGKTCKGDREDEWMGVTLARQPKANGSVLACAHRWKNI 148

  Fly   143 NNEND----YNNGMCYWLSDTPKNIDSTEVMEKWPLRIEKKQVLKLADTNLIPYY-----SMGE- 197
            ..|::    |  |.|..:   |.|:.:.                   ..||:|.|     ..|| 
 Frog   149 YYESEDILPY--GYCVII---PPNLHAN-------------------GNNLMPCYEEYKKKYGEE 189

  Fly   198 -----LGLSAHVSDDNSKLLMGAPGIDQWKGSVHLKQEVPSIKTSSGRQRRGMN-TNRKCNECNP 256
                 .|::....::  .::|||||...|.|:|.:                 :| |:.|..:...
 Frog   190 HGSCQAGIAGSFMEE--LVVMGAPGSYYWTGTVKV-----------------LNLTDNKYFKLRD 235

  Fly   257 EPKNFGQEEFSYFGYAVSSGYFDSSNLSTVLYVATAPRGNNQFGEAYIF--DIYEDSIYKYHEFR 319
            :...  ::.::|.||||::|:|  |..:|:..||.||: :::.|:.:||  |....|:.|..:..
 Frog   236 QVAT--EKRYTYLGYAVTAGHF--SQPTTMDVVAGAPQ-DSRIGKVFIFRTDKRSVSLVKIFQAS 295

  Fly   320 GNHFGEYFGYSVLAEDLNGDGKTDVIISAPLYALRNSYDDGAIYVFINKGSFTFEERI-IRSPAG 383
            |...|.|||.|:.|.|||.||.:|:::.||:::  ...|:|.:.|:||:|:...:|.| :.....
 Frog   296 GKKVGSYFGSSLCAVDLNSDGLSDLLVGAPMFS--EVRDEGQVTVYINRGNGVMDEHINLNGDNA 358

  Fly   384 SGGRFGTTLSRIGDINKDGYNDVAVGAPFAGN--GSVFIYLGSENGLRDPPSQCLDAPSQQPSKY 446
            ....||.:::.:|||:.||:.|||:|||...:  |:|:||.|...|:....|..:.:.|..|   
 Frog   359 YNAHFGESMANLGDIDDDGFPDVAIGAPQEDDYAGAVYIYHGDTLGIVSKYSMRISSKSIGP--- 420

  Fly   447 GSYMFGHGLSRGSDIDGNGFNDFAIGAPNAEAVYLYRAYPVVKIHA---------IIKPKLQNVN 502
            |..|||..:|.|.|:|.||:.|..|||..::...|.|..||:.:..         |..|:..:..
 Frog   421 GLMMFGQSVSGGIDMDKNGYLDLTIGAFMSDTAVLLRTRPVITVDVTILLPTSINITAPQCHDGT 485

  Fly   503 PEEERVNITVCYRLSSKSDSKAKALMEQELVIRIDIDTKSKIK------LAVFDEEHGSQMSFKA 561
            .:...||:|||:|...|     ....|.||...:..|...|.|      ..|...|:.:|:|.|.
 Frog   486 QQINCVNVTVCFRFRGK-----HVPGEIELYYNLTADVAKKEKSQQPRVFLVSSGENVAQVSEKL 545

  Fly   562 KAFHEEI-CSEFQIEMDKRAK--FTPIALEMQYELSKKIPNSGDFCEDCAVVDP------AEPKF 617
            :..|.|: |.::...:.:|.|  .:||..|..|.|.:.|.|:..  ::...:.|      .:...
 Frog   546 QLTHLELKCEQYLAHVKRRVKDVISPIVFEASYSLGEHIINNQQ--KELPALKPILRWKKGDKLA 608

  Fly   618 VTEYITFNTGCATDVCVADLKI-------SCINASSTLVLGTTAVLRLTYNITNNGEFAYHP--- 672
            ......|...|.:|.|.|||.:       |..:.:..|.||....:.|..:::|.|:.||..   
 Frog   609 QRNQTRFERNCRSDDCAADLNLKGKLLLSSFDSKTPYLALGAVKNISLNISVSNYGDDAYDTNVY 673

  Fly   673 ----------KFSVTNSAGLSLAQVPGNCK-VNEAVMVCDLNHGQRMAKGDTDSLTISFDVRQLR 726
                      |....:..|:|       |: :.:..:.|.:......:|... ..::.||...|.
 Frog   674 FNFSRELYFIKMWQEDELGIS-------CELLEDDFLKCSVGFPFMRSKSKY-KFSVIFDTIHLS 730

  Fly   727 G--RSLE--IQAEVLSARDESNPENNKLTNVLSLREKADIYVSGVQTNDHVVLKESPYTAEVVNY 787
            |  .||:  :.|:..:...|.:..:|.|...:||..:.|..|:||.:....|..||...:..:..
 Frog   731 GDEESLQFLVTAQSGNIEKEESLHDNILHLAVSLMHEVDTSVTGVVSPSSFVYGESVDPSNFIQL 795

  Fly   788 YEIKSH-------------GPSTLENLTVSLYIP--VAYKTPDSTNVKHIVTSSPK----IQSKY 833
            .:::.|             |||||...|:::..|  :.....:...::.|:.|..|    .|...
 Frog   796 QDLECHFQPLNFSFQVYNAGPSTLPGSTINVLFPNRLTATGAEMFYIQDIMVSQDKGNCSFQKNP 860

  Fly   834 AHKIMPINFIDQNNALANNFAIDHDQSTLLFSATPQHENVGNLSGIVEQNPSISLLNEDLPVNNT 898
            |..::|   .|:.|.....||        .|:.:.:                 .:|..:....:.
 Frog   861 APCVIP---QDKENIFHTIFA--------FFTKSGR-----------------KMLECERTSKSC 897

  Fly   899 LVLNCQDTNVTLCVPVEIRLENGLQLKPEELMNMTVSFTVNL----KDADDIWEYFVIQTDLKVH 959
            |||||..::                |..||..|:.|...:|.    ||:..:.: ||.:..:|| 
 Frog   898 LVLNCYISS----------------LAKEETRNIDVLMLLNTEILKKDSSSVIQ-FVSKAVVKV- 944

  Fly   960 KIGDPTLSSFTIEK--KIESNVICK-------HAEIAIWKIIVSVIVGILVFSAATYALYKRGFF 1015
               |.||.:..:::  ..::.||.:       ...:..|.|.:|::||||:|......|:|.|||
 Frog   945 ---DSTLRAIEVQQGNSNQATVIFEALHNLEPRGYVVGWIIAISLLVGILIFLLLAVLLWKMGFF 1006

  Fly  1016 KRAIKDDLKQLIRDSFEDGIIRTE--MEENAQS 1046
            :|..|:             ||..|  .:||.:|
 Frog  1007 RRRYKE-------------IIEAEKNRKENEES 1026

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ItgaPS4NP_611025.2 VCBS 335..408 CDD:290251 25/73 (34%)
Int_alpha 384..434 CDD:214549 19/51 (37%)
Int_alpha 447..>492 CDD:214549 18/44 (41%)
Integrin_alpha2 484..808 CDD:285619 83/385 (22%)
itga9XP_002940293.3 Int_alpha 43..91 CDD:214549 14/49 (29%)
Int_alpha 243..>280 CDD:214549 15/39 (38%)
Int_alpha 300..345 CDD:214549 20/46 (43%)
Int_alpha 360..413 CDD:214549 20/52 (38%)
Int_alpha 424..>465 CDD:214549 17/40 (43%)
Integrin_alpha2 458..902 CDD:400650 99/486 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D105280at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23220
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.110

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