DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ItgaPS4 and itga11

DIOPT Version :9

Sequence 1:NP_611025.2 Gene:ItgaPS4 / 36693 FlyBaseID:FBgn0034005 Length:1069 Species:Drosophila melanogaster
Sequence 2:XP_017947982.1 Gene:itga11 / 100489152 XenbaseID:XB-GENE-483822 Length:1188 Species:Xenopus tropicalis


Alignment Length:1282 Identity:259/1282 - (20%)
Similarity:461/1282 - (35%) Gaps:430/1282 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 PELEGNRRSSYFGFSL----VIREKSIMVAAPRANSSLEAQRNISEP---GVIFRCYF--ESGNN 87
            |.:....:.::||:::    :..:|.::|.||         .:::.|   |.|::|..  ::.|:
 Frog    30 PRIISGSKDAFFGYTVQQHQIAGKKWLVVGAP---------FDVNGPQKTGDIYKCSVTNDTSND 85

  Fly    88 CSPYNIDTKGNYKGMPNDGLLTAKN----KDFRWLGGAMDGGTRDSDKFLVCAPRFYSINNENDY 148
            |:...|            |.:|..|    ||...||.::....:| :.|:.|:|.:......:.|
 Frog    86 CTKLGI------------GRVTLSNVSERKDNMRLGMSLVTNPKD-NSFVACSPLWSHECGSSYY 137

  Fly   149 NNGMC------------------------------------------------------------ 153
            ..|||                                                            
 Frog   138 TTGMCSRVNSNFRFSRIVAPALQRCPTFMDIVIVLDGSNSIYPWVEVQSFLISILQKFYIAPGQI 202

  Fly   154 --------------YWLS---------DTPKNIDS----------------TEVMEKWPLRIEKK 179
                          ::|:         :..|.|:.                ||..::...:..||
 Frog   203 QVGVLQYGETVVHEFYLNNYRSVTDVVEAAKRIEQRGGTETRTALGIEKAVTEAFQRGGRKGAKK 267

  Fly   180 QVLKLAD-------------------------TNLIPYYS------------------------- 194
            .::.:.|                         ..::.||:                         
 Frog   268 VMIVITDGESHDSPDLQRVIESSEKDNITRYAVAVLGYYNRRGINPEAFLNEIKYIASDPDDKHF 332

  Fly   195 -------------------------------------MGELGLSAHVSDDNSKLLMGAPGIDQWK 222
                                                 |.:.|.|:||.:|.  :|:||.|...|.
 Frog   333 FNVTDEAALKDIVDALGERIFSLEGGTNKNETSFGLEMSQAGFSSHVVEDG--ILLGAVGAYDWN 395

  Fly   223 GSVHLKQEVPSIKTSSGR--QRRGMNTNRKCNECNPEPKNFGQEEFSYFGYAVSSGYFDSSNLST 285
            |:| ||:      ||||:  .||    .....|...|.||.|    :|.||.|:|       :.|
 Frog   396 GAV-LKE------TSSGKVIPRR----ESYLKEFPDELKNHG----AYLGYTVTS-------VMT 438

  Fly   286 ----VLYVATAPRGNNQFGEAYIFDIYEDSIYKYHE-FRGNHFGEYFGYSVLAEDLNGDGKTDV- 344
                .:|||.|||.|:. |:..:|.::.......|: .:||..|.|||..:.:.|::|||.||: 
 Frog   439 WQRVRIYVAGAPRFNHT-GKVIVFTMHGAENMTIHQALQGNQIGSYFGGEMDSVDVDGDGVTDIL 502

  Fly   345 IISAPLYALRNSYDDGAIYVFINKGSFTFEERIIRS------PAGSGGRFGTTLSRIGDINKDGY 403
            ::.||:|.: :.::.|.:.||:.:     |.:.|.:      .:....|||::::.:.|:|:|.|
 Frog   503 LVGAPMYFI-DGWERGRVSVFVLR-----ERQFIHNGFLQDLNSSQNSRFGSSIAAVPDLNQDLY 561

  Fly   404 NDVAVGAPFAGN--GSVFIYLGSENGLRDPPSQCLDAPSQQPSKYGSYMFGHGLSRGSDIDGNGF 466
            |||.||||...|  |:::|:.|....:.....|.:.|....|   |...||..:....|::.:|.
 Frog   562 NDVVVGAPLEDNHKGAIYIFHGLRKNILKKYKQRISAAELAP---GLVYFGCNIHGEMDMNEDGL 623

  Fly   467 NDFAIGAPNAEAVYLYRAYPVVKIHAIIKPKLQNVNPEEERVNI--TVCYRLSSKSDS------- 522
            .|.|:|: ...||.|: ...||||:|       .::.|..::||  ..|:|...::..       
 Frog   624 VDLAVGS-MGNAVLLW-TRSVVKINA-------TMHFEPPKINIFSKDCHRNGREATCMSAFICF 679

  Fly   523 ----KAKALMEQELVIR--IDIDTKSKIKLAVFDEEHGSQ---MSFKAKAFHEEICSEFQIEMDK 578
                ||:....|.:.|:  :.||.:..|..|:.|:..|.:   .:.:|.:.|.: |.:....:..
 Frog   680 SPMFKAQQFQGQNVAIKYNVSIDERRYIPRAIIDDIGGDKHFVKTIRATSGHNQ-CQQLNFHVLD 743

  Fly   579 RAKFT-PIALEMQYELSKKIPNSGDFCEDCAVVDPAEPKFVTEYITFNTGCATDV-CVADLK--- 638
            .|.:. ||...::|||:        |.:...|::...|..:...:.|..||..|. ||.||.   
 Frog   744 TADYVKPITFSLEYELA--------FSDQGPVLEEDWPTSLKVSVPFWNGCNQDERCVPDLYLDV 800

  Fly   639 -------------------------ISCINASSTLVLGTTAVLRLTYNITNNGEFAYHPKFSVTN 678
                                     ||..:.|..::..:...:.|...:.|.||.||....::::
 Frog   801 KHDIPTALEYCQRFLYRTQSACTEFISAFDNSVFIIQRSRRRVALEVVLENRGENAYSTALNISH 865

  Fly   679 SAGLSLA--------QVPGNCKVNEA---VMVCDLNHGQRMAKGDTDSLTISFDVRQLRGRSLEI 732
            |..|..|        .:...||.::.   ...|::::....||... :..:.|:..:.:.... :
 Frog   866 SQNLQFASLITKEDSDIKIECKSDDRFPHTKTCNVSYPFFRAKAKV-AFRLDFEFSKYQFLPF-L 928

  Fly   733 QAEVLSARDESNPENNKLTNVLSLREKADIYVSGVQTNDHVVLKESPYTAEVVNYYEIKSHGPST 797
            |..:.:..|....|:.:..|.:.|    |.::.  ..:|.:..:.|.     :|:|||.|.|.:.
 Frog   929 QVHLSAGSDSEEQESTRFDNEVLL----DFHLK--YESDLLFTRHSS-----LNHYEITSEGSAD 982

  Fly   798 LEN-----LTVSLYIPVAYKTPDSTNVKHIVTSSPKIQSK--YAHKIMPINFIDQNNALANNFAI 855
            ..|     ...|..|......|:..|:|..|..:.:..::  :.|.::.    ||.||:.|.:..
 Frog   983 RYNAIGPPFNSSFKIQNLGFFPEEINLKITVPVATRGGNRLLFLHSLIS----DQENAVCNIWGN 1043

  Fly   856 DHD------QSTLLFSATPQ--HENVGNLS----GIVEQNPSIS-LLNEDLPVNNTLVLNCQDTN 907
            ..|      :..|  |..||  |.|...:|    .|:..|...| :|:.||...:...:|.:..|
 Frog  1044 STDYRRKPTEEDL--SRVPQLNHSNSDVISIDCVLILASNQEASFILHGDLWSRSFRAMNFRSVN 1106

  Fly   908 VTLCVPVEIRLENGLQLKPEELMNMTVSFTVNLKDADDIWEYFVIQTDLKVHKIGDPTLS-SFTI 971
            |.:...::.:.::....:.||                                   ||.. :|.|
 Frog  1107 VVVFAALQRKFQSPFIFREEE-----------------------------------PTRQITFAI 1136

  Fly   972 EKKIESNVICKHAEIAIWKIIVSVIVGILVFSAATYALYKRGFFKRA 1018
            .|:.|       .|:.||.||.|.:.|:|:.:....||:|.|||||:
 Frog  1137 SKQEE-------WEVPIWVIITSTLGGLLLLALLVLALWKLGFFKRS 1176

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ItgaPS4NP_611025.2 VCBS 335..408 CDD:290251 24/79 (30%)
Int_alpha 384..434 CDD:214549 18/51 (35%)
Int_alpha 447..>492 CDD:214549 15/44 (34%)
Integrin_alpha2 484..808 CDD:285619 74/387 (19%)
itga11XP_017947982.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23220
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

Return to query results.
Submit another query.