DRSC/TRiP Functional Genomics Resources

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Protein Alignment ItgaPS4 and itga8

DIOPT Version :10

Sequence 1:NP_611025.2 Gene:ItgaPS4 / 36693 FlyBaseID:FBgn0034005 Length:1069 Species:Drosophila melanogaster
Sequence 2:XP_002939074.2 Gene:itga8 / 100487624 XenbaseID:XB-GENE-961825 Length:1081 Species:Xenopus tropicalis


Alignment Length:1139 Identity:291/1139 - (25%)
Similarity:486/1139 - (42%) Gaps:209/1139 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 CLLVIVLLALQSEINAYNISPYPNSVLNFPELEGNRRSSYFGFSLVI-----REKSIMVAAPRAN 62
            |.:::|:: |....:|:|:.....:|.:.|.      .||||:|:..     .:.||::.||:||
 Frog    42 CPMLMVIM-LSGVCSAFNLDVEKVTVYSGPP------DSYFGYSVDFYLPDSAKTSILIGAPKAN 99

  Fly    63 SSLEAQRNISEPGVIFRCYF----ESGNNCSPYNIDTKGNYKGMPNDGLLTAKNKDFRWLGGAMD 123
            :|   |..|.|.|.::.|.|    .:|....|::|....|.:  .|......:.|..:|.|..: 
 Frog   100 TS---QPQIVEGGAVYYCPFPDTLPTGCKQIPFDITNNRNIR--LNGTKQPVEFKSNQWFGATV- 158

  Fly   124 GGTRDSDKFLVCAPRFYSINNENDYNNGMCYWLSDTPKNIDSTEVMEKWPLRIEKKQVLKLADTN 188
              ....:|.:.|||.:              :|.|..|       :.||.|:     ....:|..|
 Frog   159 --RAHKEKVVACAPLY--------------HWRSIKP-------ISEKDPV-----GTCYIAIQN 195

  Fly   189 LIPY--YS---------MGELGLSAHVSDD---NSKLLMGAPGIDQWKGSVHLKQEVPSIKTSSG 239
            ...|  ||         .|:....|..|.|   |..|.:|.||...|:|.|........||..|.
 Frog   196 FSAYAEYSPCRSDLADPAGQGVCQAGFSLDFYKNGDLALGGPGSFYWQGQVFTASIADIIKDYSF 260

  Fly   240 RQRRGMNTNRKCNECNPEPKNFGQEEF--SYFGYAVSSGYFDSSNLSTVLYVATAPRGNNQFGEA 302
            :     :..||.:  ..:.....|..:  ||.||:|:.|.|...::..|  ||..|||...||  
 Frog   261 K-----SIIRKIS--GEKQTKMAQSAYDDSYLGYSVAVGEFTDDSVQEV--VAGVPRGAQNFG-- 314

  Fly   303 YIFDIYEDSIYKYHEFRGNHFGEYFGYSVLAEDLNGDGKTDVIISAPLYALR----NSYDDGAIY 363
            |:..|....:.....|.|:....||||:|...|:|.||..|:::.|||:..|    |..:.|.:|
 Frog   315 YVSIINSTDMTFIQNFTGDQMASYFGYTVAVSDVNNDGLDDILVGAPLFMDREFESNPREVGKVY 379

  Fly   364 VFINKGSFTFEERIIRSPAGSGGRFGTTLSRIGDINKDGYNDVAVGAPFAG---NGSVFIYLGSE 425
            :::.:.:..|.:..:.......||||:.::.:||:|:|||||:|||:||||   .|.||||.|:.
 Frog   380 LYMQESALEFRDPQVLKGTEVFGRFGSAIAHLGDLNQDGYNDIAVGSPFAGEDRKGRVFIYNGNS 444

  Fly   426 NGLRDPPSQCLD-APSQQPSKYGSYMFGHGLSRGSDIDGNGFNDFAIGAPNAEAVYLYRAYPVVK 489
            |||....||.|: |.:.|....|   ||..|...||||.|.:.|..:||..|....:|||.||:.
 Frog   445 NGLNTDTSQILEGAWASQSMPAG---FGFTLRGDSDIDKNDYPDLIVGAFGAGKAVVYRARPVIT 506

  Fly   490 IHA--IIKPKLQNVNPEEER------------VNITVCYRLSSKSDSKAKALMEQELVIRIDID- 539
            :.|  ::.|.:  :|||.:.            ..:.||..:|.:|       :...:|::.|:: 
 Frog   507 VDAQLLLHPMI--LNPENKTCQLPNSEFLVTCFTVRVCVTVSGQS-------IPSNIVVKADLEL 562

  Fly   540 ----TKSKIKLAVFDEEHGSQMSFKAKAFHEEI--CSEFQI----EMDKRAKFTPIALEMQYELS 594
                .|..:|..:|.|.|.:..||......:.:  |.:|.:    |.:.|.|.|||::.:.|.|.
 Frog   563 DWLKQKGAVKRTLFMESHQAHHSFDLIINKQRLSQCLDFLVYLREESEFRDKLTPISVNLNYSLD 627

  Fly   595 KKIPNSGDFCEDCAVVDPAEPKFVTEYITFNTGCATD-VCVADLKISCINASSTLVLGTTAVLRL 658
            :. ...|| .|...:::..:...:.|.......|..| :|:.|||:|.....:.||:|....:..
 Frog   628 ES-AYLGD-QELKPILNRYKKATIQEQAHILVDCGEDNMCIPDLKLSARPDKNQLVIGEENHILF 690

  Fly   659 TYNITNNGEFAYHPKFSV------------TNSAGLSLAQVPGNCKV---NEA-VMVCDLNHGQR 707
            ..|..|.||.||..:..:            .|..||...    ||:.   ||: ::||||  |..
 Frog   691 IINTKNQGEGAYEAELRMIIPPEADYVGIERNMEGLRQL----NCEYKMENESRLVVCDL--GNP 749

  Fly   708 MAKGDTDSLTISFDVRQLRGRSLEIQAEVLSARDESNPENNKLTNVLSLREKADIYVSGVQTNDH 772
            |..|...|:.:.|.|::|...........:.:.::.||.:|.::..:::...|.:.:.||.....
 Frog   750 MVAGTNLSVGLRFVVQRLETVDAITFDLYIKSSNKDNPNSNFVSLQVNITAVAQVEIRGVSHPPQ 814

  Fly   773 VVL-------KESPYTAE-----VVNYYEIKSHGPSTLENLTVSLYIPVAYKTPDSTNVKHIVTS 825
            ::|       ||.|...:     |.:.||:.:.|||.:....:::..|...:......|.||.|.
 Frog   815 IILPIPNWEPKEKPSEEKDVGPLVQHIYELHNIGPSAISETQLNVGWPSQSRDEFLLYVFHIQTE 879

  Fly   826 SP-KIQSKYAHKIMPINFIDQNN-----ALANNFAIDHDQSTLLFSATPQHENVGNLSGIVEQNP 884
            .| |.|:..|...:.|...:..:     |...|.::.|                    .:..::.
 Frog   880 GPLKCQAGSAINTLNIKPSEPEDTPELAAFLRNTSVSH--------------------AVSRRDV 924

  Fly   885 SISLLNEDLPVNNTLVLNCQDTNVTLCVPVEIRLEN--GLQLKPEELMNMTVSFTVNLKDADDIW 947
            :::.....:| ..|.:|||  |||. |:.:..::.:  |.|....::.:...:.|. |:..:|.:
 Frog   925 AVAEALRHIP-TPTKLLNC--TNVK-CLMISCKVGHLGGGQRAVVKIRSRLWAPTF-LQRKNDYY 984

  Fly   948 EYFVIQTDLKVHK----IGDPTLSSFTIEKKIESNVICKHAEIA----IWKIIVSVIVGILVFSA 1004
            . .:.....:|.|    |....|.:.||  .|:::||.....|:    :|.|::::::||||.:.
 Frog   985 S-LIANVSFEVKKMPYDIQPAKLPAATI--LIKTSVIWATPNISFAIPLWVILLAILLGILVLAI 1046

  Fly  1005 ATYALYKRGFFKRA------IKDDLKQLIRDSFE 1032
            .|..::|.|||.||      :.||.:||...:.|
 Frog  1047 LTLVMWKCGFFDRARPPQDDVADDTQQLTNKTAE 1080

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ItgaPS4NP_611025.2 FG-GAP_3 335..408 CDD:433275 25/76 (33%)
Int_alpha 384..434 CDD:214549 28/52 (54%)
Int_alpha 447..>492 CDD:214549 18/44 (41%)
Integrin_alpha2 486..808 CDD:462478 84/375 (22%)
itga8XP_002939074.2 Int_alpha 71..130 CDD:214549 20/67 (30%)
Int_alpha 335..>385 CDD:214549 17/49 (35%)
Int_alpha 401..455 CDD:214549 30/53 (57%)
Int_alpha 468..510 CDD:214549 17/41 (41%)
Integrin_alpha2 502..952 CDD:462478 106/490 (22%)

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