DRSC/TRiP Functional Genomics Resources

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Protein Alignment ItgaPS4 and itgae.1

DIOPT Version :9

Sequence 1:NP_611025.2 Gene:ItgaPS4 / 36693 FlyBaseID:FBgn0034005 Length:1069 Species:Drosophila melanogaster
Sequence 2:XP_002664631.3 Gene:itgae.1 / 100333951 ZFINID:ZDB-GENE-131121-125 Length:547 Species:Danio rerio


Alignment Length:732 Identity:138/732 - (18%)
Similarity:253/732 - (34%) Gaps:267/732 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LLVIVLLALQSEINAYNISPYPNSVLNFPELEGNRRSSYFGFSLVIREKSIMVAAPRANSSLEAQ 68
            ||.:::|...:..| ..|||    |.:|     ......||.:::..:..|.|.:|..       
Zfish     5 LLFVMVLCNAAGFN-IQISP----VKHF-----TNEDPLFGQTIIQAKDGIFVPSPTY------- 52

  Fly    69 RNISEPGVIFRCYFESGNNCSPYNIDTKGNYKGM---PNDGLLTAKNKDFRWLGGAMDGGTRDSD 130
                  |.:|:|..:  |.|:..||:.: |.|||   .:...||::                  :
Zfish    53 ------GRLFKCTLD--NECTKVNINDE-NPKGMRPVASVASLTSQ------------------E 90

  Fly   131 KFLVCAPRFYSINNENDYNNGMCYWLSDTPKNIDSTEVMEKWPLRIEKKQVLKLADTNLIPYYSM 195
            :.:|...:..:.|...:|.||:|..:|.:.|       ::.:|..::..:               
Zfish    91 QHVVMCNQVRTENRGTEYLNGICTLVSPSGK-------VKLYPAELDNNK--------------- 133

  Fly   196 GELGLSAHVSDDNSKLLMGAPGIDQWKGSVHLKQEVPSIKTSSGRQRRGMNTNRKCNECNPEPKN 260
               ..:.:.:::|:|...|.  |:|..|:     |:..:...||                    :
Zfish   134 ---NNNNNNNNNNNKYQGGR--INQGPGT-----EIAFVLDGSG--------------------S 168

  Fly   261 FGQEEFSY---FGYAVSSGY----FDSSNLSTVLYVATAPRGNNQFGEAYIFDIYED---SIYKY 315
            ...::|..   |.|.|.|..    || .|.:.|.|      |:....|..:.| .||   |:.|.
Zfish   169 IQDDDFQKAKDFIYNVMSNVWKTCFD-CNFAIVQY------GSLIRTELSLLD-NEDRVGSLLKV 225

  Fly   316 HEFRGNHFGEYFGYSVLAEDLNGDGKTDVIISAPLYALRNSYDDGA-IYVFINKGSFTFEERIIR 379
            .:.:     :.:..:..|..:| ...||:.|..     ..|.|:.| |.:.::.|      :|:.
Zfish   226 KQIK-----QIYNLTKTASAIN-HVLTDIFIPE-----NGSKDNSAKIIIVLSDG------KILG 273

  Fly   380 SPAGSGGRFGTTLSRIGDINK---DGYNDVAVGAPFAGNGSVFIYLGSENGLRDPPSQCLDAPSQ 441
            .|        .||..:  :||   .|....::|   .|:|.:               :.|||..:
Zfish   274 DP--------MTLDEV--LNKPQMKGVTRYSIG---VGDGIL---------------KNLDATEE 310

  Fly   442 -----QPSKY---GSYM----FGHGLSRG----SD--------IDGNGF---NDFAIGAPNAEAV 479
                 .|.||   .||.    ....|.||    .|        :||:|.   :||     .....
Zfish   311 MMQIADPGKYYNVSSYRALNDIVSSLERGIIGTKDPGTEIAFVLDGSGSIQDDDF-----QKAKD 370

  Fly   480 YLYRA------------YPVVKIHAIIKPKLQNVNPEEERVNITVCYRLSSKSDSKAKALMEQEL 532
            ::|..            :.:|:..::|:.:|                 |...::.:|.:|::.:.
Zfish   371 FIYNVMSNVWKTCFDCNFAIVQYGSLIRTEL-----------------LLLDNEDRAGSLLKVKQ 418

  Fly   533 VIRIDIDTK-----SKIKLAVFDEEHGSQMSFKAKAFHEEICSEFQIEMDKRAKFTPIALE---- 588
            :.:|...||     :.:...:|..|.||:.: .||..  .:.|:.:|..|      |:.|:    
Zfish   419 IKQIYNLTKTASAINHVLTDIFIPEKGSKNN-TAKII--IVLSDGEILED------PMTLDEVLN 474

  Fly   589 -------MQYELS-----KKIPNSGDFCEDCAVVDPAEPKFVTEYITFNTGCATDVCVADLKISC 641
                   .:|.:.     .|.||:  ..|...:.||.:...|:.|     |...|: ::.|:...
Zfish   475 KPQMKGVTRYSIGVGDGILKKPNA--VKEMMQIADPGKYYSVSSY-----GALNDI-LSSLEREI 531

  Fly   642 INASSTLVLGTTAVLRL 658
            |......|  ||.||::
Zfish   532 IGTEGDSV--TTTVLQI 546

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ItgaPS4NP_611025.2 VCBS 335..408 CDD:290251 16/76 (21%)
Int_alpha 384..434 CDD:214549 8/52 (15%)
Int_alpha 447..>492 CDD:214549 13/75 (17%)
Integrin_alpha2 484..808 CDD:285619 38/208 (18%)
itgae.1XP_002664631.3 vWFA 157..332 CDD:294047 48/252 (19%)
vWFA 348..523 CDD:294047 36/212 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574898
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.740

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