Sequence 1: | NP_611025.2 | Gene: | ItgaPS4 / 36693 | FlyBaseID: | FBgn0034005 | Length: | 1069 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_012825487.1 | Gene: | itgav / 100144691 | XenbaseID: | XB-GENE-488969 | Length: | 1034 | Species: | Xenopus tropicalis |
Alignment Length: | 1155 | Identity: | 278/1155 - (24%) |
---|---|---|---|
Similarity: | 475/1155 - (41%) | Gaps: | 235/1155 - (20%) |
- Green bases have known domain annotations that are detailed below.
Fly 5 LVIVLLALQSEIN-AYNISPYPNSVLNFPELEGNRRSSYFGFSLVIREKS-----IMVAAPRANS 63
Fly 64 SLEAQRNISEPGVIFRCYFESGNNCSPYNIDTKGNYKGMPNDGLLTAKNKDFRWLGGAMDGGTRD 128
Fly 129 SDKFLVCAPRFY---SINNENDYNNGMCYWLSDTPKNIDSTEVMEKWPLRIEKKQVLKLADTNLI 190
Fly 191 PYYSMGELGLSAHVSDDNSKLLMGAPGIDQWKGSVHLKQEVPSIKTSSGRQRRGMNTNRKCNECN 255
Fly 256 PEPKNFGQEEFSYFGYAVSSGYFDSSNLSTVLYVATAPRGNNQFGEAYIFDIYEDSIYKYHEFRG 320
Fly 321 NHFGEYFGYSVLAEDLNGDGKTDVIISAPLYALRNS----YDDGAIYVFINKGSFTFEERIIRSP 381
Fly 382 AGSGGRFGTTLSRIGDINKDGYNDVAVGAPFAG---NGSVFIYLGSENGLRDPPSQCLDAPSQQP 443
Fly 444 SKYGSYMFGHGLSRGSDIDGNGFNDFAIGAPNAEAVYLYRAYPVVKIHAIIKPKLQNVNPEEERV 508
Fly 509 NI-----TVCYRLSSKSDSKAKALMEQELVIRIDI-----DTKSKIKLAVF----DEEHGSQMSF 559
Fly 560 KAKAFHEEICSEFQI----EMDKRAKFTPIALEMQYELSKKIPNSGDFCEDCAVVDPAEPKFVTE 620
Fly 621 YITFNTGCATD-VCVADLKISCINASSTLVLGTTAVLRLTYNITNNGEFAYHPKFSVTNSAGLSL 684
Fly 685 AQVP------GNCKVNEA---------------VMVCDLNHGQRMAKGDTDSLTISFDVRQL--R 726
Fly 727 GRSLEIQAEVLSARDESNPENNKLTNVLSLREKADIYVSGVQTNDHVVL-------KESPYTAE- 783
Fly 784 ----VVNYYEIKSHGPSTLENLTVSLYIPVAYKTPDSTNVKHIVTSSPKIQSKYAHKIMPINFID 844
Fly 845 QNNALANNFAIDHDQSTLLFSATPQHENVGNLSGIVEQNP-----SISLLNE------------- 891
Fly 892 --DLPVNN--TLVLNCQDTNVTLCVPVEI---RLENG----LQLKPE-----ELMNMTVSFTVNL 940
Fly 941 KDADDIWEYFVIQTDLKVHKIGDPTLSSFTIEKKIESNVI----CKHAEIAIWKIIVSVIVGILV 1001
Fly 1002 FSAATYALYKRGFFKRAIKDDLKQLIRDSFEDGIIRTEMEENAQSQGDAD 1051 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
ItgaPS4 | NP_611025.2 | VCBS | 335..408 | CDD:290251 | 24/76 (32%) |
Int_alpha | 384..434 | CDD:214549 | 21/52 (40%) | ||
Int_alpha | 447..>492 | CDD:214549 | 17/44 (39%) | ||
Integrin_alpha2 | 484..808 | CDD:285619 | 84/377 (22%) | ||
itgav | XP_012825487.1 | Int_alpha | 36..>80 | CDD:214549 | 16/46 (35%) |
WD40 repeat | 177..230 | CDD:293791 | 13/57 (23%) | ||
Int_alpha | 237..>277 | CDD:214549 | 14/44 (32%) | ||
WD40 repeat | 243..287 | CDD:293791 | 11/47 (23%) | ||
Int_alpha | 291..344 | CDD:214549 | 20/52 (38%) | ||
WD40 repeat | 296..352 | CDD:293791 | 19/55 (35%) | ||
Int_alpha | 356..411 | CDD:214549 | 23/54 (43%) | ||
WD40 repeat | 361..412 | CDD:293791 | 21/50 (42%) | ||
Int_alpha | 420..466 | CDD:214549 | 17/45 (38%) | ||
Integrin_alpha2 | 457..900 | CDD:369878 | 106/507 (21%) | ||
Integrin_alpha | 1003..1017 | CDD:334029 | 8/22 (36%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |