DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scb and Itgae

DIOPT Version :9

Sequence 1:NP_523750.2 Gene:scb / 36692 FlyBaseID:FBgn0286785 Length:1115 Species:Drosophila melanogaster
Sequence 2:NP_113956.2 Gene:Itgae / 83577 RGDID:621644 Length:1169 Species:Rattus norvegicus


Alignment Length:996 Identity:214/996 - (21%)
Similarity:379/996 - (38%) Gaps:260/996 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   166 NNT------VASTPQ-----HVTRISPL-----RLKSEQVKEEDN-GNKASFFYIMGELGLSAHV 213
            |||      :||.|:     .||..|.|     :|:...:..|.. |:  :..|.:.:.|.||.:
  Rat   343 NNTYRELKLIASDPKAAHTFKVTNYSALDGLLSKLQQRIIHMEGTVGD--TLQYQLAQTGFSAQI 405

  Fly   214 ADDNTKFLIGAPGINTWRGSVILYRQVDPVDNPTASRRDTSKALRRTYRDVDSNDYTPEHYAPEI 278
            .|.. :.|:|..|...|.|..:||.          ::....:.|.:|.::    |:....|    
  Rat   406 LDKG-QVLLGTVGAFNWSGGALLYN----------TQNGRGRFLNQTAKE----DFRAAQY---- 451

  Fly   279 PTPGLWGQEEDSYFGYAVSSGFFDSSNPTKLLYVATAPQANKQSGEAYIFDVRGKSIHKYHVFR- 342
                       ||.||:|::    ......:.|||.||: :|..|.  :|:::.:...:..:.| 
  Rat   452 -----------SYLGYSVAA----LHKAHGVSYVAGAPR-HKLRGA--VFELQKEDGEETFMRRI 498

  Fly   343 -GEQFGEYFGYSVLAEDLNGDGKTD-VIVSAPQHALEDSHDNGAIYVF---INKGFFNFERQILR 402
             |||.|.|||..:...|:|.||.|| ::|:||.:.:..  :.|.:||:   .....|:....:..
  Rat   499 EGEQMGSYFGSVLCPVDINMDGITDFLLVAAPFYHIRG--EEGRVYVYRVHEQDAPFSLVYTLSG 561

  Fly   403 SPVETMARFGTALSRLGDINHDGYNDVAVGAPFAG--------NGTVFIYLGSENGLRDQPSQRL 459
            .|..|.:|||.|::.:||||.|.:.|||:|||..|        .|:|:||.|...||...|||::
  Rat   562 YPGLTSSRFGFAMAAVGDINQDKFTDVAIGAPLEGFGAGDGASYGSVYIYNGHSGGLHASPSQQI 626

  Fly   460 DAPSQQPSKYGSHMFGHGLSRGSDIDGNGFNDFAIGAPNAEAVYLYRAYPVVKVHATVKSESREI 524
            .|.|   ...|.:.||..:|.|.|..|:...|..:|:.:...|  .|:.|||.:  ||   |...
  Rat   627 RASS---VALGLYYFGMSVSGGLDFSGDDLADITVGSQDVAVV--LRSRPVVDL--TV---SMTF 681

  Fly   525 KPE------QEKVKITACYRLSTTSTDKLVQEQELAIRIAMD----KQLKRVKFTQTQTNEISFK 579
            .|:      ::|:.:..|:::.:::.......:.:::...:|    ||.:|::.......:....
  Rat   682 TPDALPMAFKDKMDVELCFKVDSSAVPSEPGLRGMSLNFTVDVDVTKQKQRLQCADRSCCQSCLM 746

  Fly   580 VNANFGEQCRDF---ETQVRYSEKDIFTPIDLEMHYELTKKV-------PDSEEFCETCAIVD-P 633
            ..:.....|..|   .|:....|.|.|:.|.:::.||.....       |..:.:.|..||.. |
  Rat   747 KWSGGSSLCEHFGLISTEEELCEDDCFSNITIKVSYEFQTSEERRNHPNPILDHYKEPSAIFQLP 811

  Fly   634 TEPKVSTQNIIFSTGCATDVCTADLQLRSKDVSPTYILGSADTLRLNYEITNIGETAYLPQFNVT 698
            .|.  ..:|.:|        |.|::||.:.......::|....:.:|..:||.||.:|:....:.
  Rat   812 YEK--DCKNKVF--------CIAEIQLTTAISQQDLVVGITKEVTMNISLTNSGEDSYMTNMALN 866

  Fly   699 STSRLAFAQVPG------NC---KVVDAVMVCDLNRGRPLAKGDTDSVTISFDVSQLSGQSLIIH 754
            ....|.|.::..      .|   |.|.:|:|.:...|.|:.|..:.:|::::.:           
  Rat   867 YPRNLQFKKIQKPLSPDIQCDDPKPVASVLVMNCKIGHPILKRSSVNVSVTWQL----------- 920

  Fly   755 AEVFSTGYEQNPTDNRQTNVIGLKEFTEIDASGGQTNSQIDLEHYSNSAEIVNNYEIKSNGPSVI 819
                    |::...||..::       .:..|.....|   |...::|.:..:.:....:.|||:
  Rat   921 --------EESIFPNRTADI-------TVTISNSNEKS---LARETHSLQFRHAFIAVLSRPSVM 967

  Fly   820 EQLTVSFYIPIAYKVAGSTAIIPIINVTSLKMQASYDSQLLSIDLYDQNNTMLVVDPVEVTTTLS 884
            ...|                           .|:|.|.:....:::.:|:               
  Rat   968 YMNT---------------------------SQSSSDHKEFFFNVHGENH--------------- 990

  Fly   885 GGLERTVITQNRQSYDIHTSGHVHQTMEVLDTSMVATASMSRKRRDLKALTANREQYARISNVKA 949
                               .|.|.|....:..::          |||:.:     :...::..:|
  Rat   991 -------------------FGAVFQLQICVPITL----------RDLQII-----RVKHLTKTQA 1021

  Fly   950 HDLLSDDFK---GKLPVNRTIVFNCRDPEMTICVRAEMRVHFRPEKSINLNMRYSVDLNEVNAIL 1011
            |...:...:   |..||.     |..:....||.....:.        |:.:...:.:.....:|
  Rat  1022 HTECTQSQEPTCGSDPVQ-----NVEEWHSVICAITSNKE--------NVTVAAEISMGHTKQLL 1073

  Fly  1012 VDPWEYFVILTDLKLQKKGDPTSTSFSI-------NRRIEPNIISKHQETGLPIWIIIVSVIGGL 1069
            .|..| ..||.::...|         |:       |.|.:..:|...:|....:.:||.|.||||
  Rat  1074 RDISE-LQILGEISFNK---------SLYEGLNAENHRTKITVIFLKEEKPHSLPLIIGSSIGGL 1128

  Fly  1070 LLLSAISYLLYKFGFFNRTKK 1090
            |:|..|..:|:|.|||.|..|
  Rat  1129 LVLVVIIAILFKCGFFKRKYK 1149

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scbNP_523750.2 Int_alpha 51..103 CDD:214549
FG-GAP 350..388 CDD:280083 13/38 (34%)
Int_alpha 409..459 CDD:214549 26/57 (46%)
Int_alpha 473..>515 CDD:214549 13/41 (32%)
Integrin_alpha2 507..829 CDD:285619 63/351 (18%)
ItgaeNP_113956.2 vWA_integrins_alpha_subunit 196..373 CDD:238746 10/29 (34%)
Int_alpha 503..559 CDD:214549 17/57 (30%)
Int_alpha 568..626 CDD:214549 26/57 (46%)
Integrin_alpha2 669..>952 CDD:285619 59/326 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335703
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23220
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.840

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