DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scb and Itga2b

DIOPT Version :9

Sequence 1:NP_523750.2 Gene:scb / 36692 FlyBaseID:FBgn0286785 Length:1115 Species:Drosophila melanogaster
Sequence 2:XP_001063315.1 Gene:Itga2b / 685269 RGDID:1596428 Length:1037 Species:Rattus norvegicus


Alignment Length:1158 Identity:280/1158 - (24%)
Similarity:454/1158 - (39%) Gaps:250/1158 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 LKFHI-NQTRSSYFGYTLVIRQ-----TSIIVGAPRAQSTLESQRTINETGAIYRC--SLTNGVC 97
            :||.: .....|:||:::...:     .||:||||||.:..:     .|||.::.|  ...||.|
  Rat    37 VKFSVYTGPNGSHFGFSVDFHKDSHGSVSIVVGAPRALNANQ-----EETGGVFLCPWKANNGTC 96

  Fly    98 SPYVLDSRGNVDAPYSEYTFDSERKDFQWLGGSMDGGTKDTDKLLVCAPRFYAPSSRDNHLHGVC 162
            :..:.|.|... ...|..||.: .|..|.||.|:   ....|.::.|||                
  Rat    97 TSLLFDLRDET-RKLSLQTFQT-FKTGQGLGASV---LSWNDVIVACAP---------------- 140

  Fly   163 YWVN-------NTVASTPQHVTRISPLRLKSEQVKEEDNGNKASFFYIMG--------ELGLSAH 212
             |.:       :....||.....::.|:............|..|..|..|        |.|.|..
  Rat   141 -WQHWNVLEKYDEAEKTPVGGCFVAELQSGGRAEYSPCRSNTMSSVYSQGFSGDKRYCEAGFSLA 204

  Fly   213 VADDNTKFLIGAPGINTWRGSVILYRQVDPVDNPTASRRDTSKALRRTYRDVDSNDYTPEHYAPE 277
            |.... :.::||||...:.|.::..    |::|..:|.|..:.....:.:....:...|.::   
  Rat   205 VTQAG-ELVLGAPGGYFFLGLLVRV----PIENIISSYRPGTLLWHVSNQRFSYDSSNPVYF--- 261

  Fly   278 IPTPGLWGQEEDSYFGYAVSSGFFDSSNPTKLLYVATAPQANKQSGEAYIFDVRGKSIHKYHVFR 342
                       ..|.||:|:.|.||....| ..|:..||..:...|...|.|...:::|:.|   
  Rat   262 -----------HGYRGYSVAVGEFDGDLST-TEYIFGAPTWSWTLGAVEILDSYYQTLHRLH--- 311

  Fly   343 GEQFGEYFGYSVLAEDLNGDGKTDVIVSAPQHALEDSHDN-----GAIYVFIN-KGFFNFERQIL 401
            |||...|||:||...|:||||:.|::|.||.: :|...|.     |.:|:|:. ||.     |.|
  Rat   312 GEQMASYFGHSVAVTDVNGDGRHDLLVGAPLY-MESRVDRKLAEVGRVYLFLQPKGL-----QAL 370

  Fly   402 RSP------VETMARFGTALSRLGDINHDGYNDVAVGAPF---AGNGTVFIYLGSENGLRDQPSQ 457
            .||      .:...|||:|::.|||:|.||||||||.||:   :|.|.|.|:||...||..:|||
  Rat   371 SSPTLVLTGTQVYGRFGSAIAPLGDLNRDGYNDVAVAAPYGGPSGQGQVLIFLGQSEGLSPRPSQ 435

  Fly   458 RLDAPSQQPSKYGSHMFGHGLSRGSDIDGNGFNDFAIGAPNAEAVYLYRAYPVVKVHATVKSESR 522
            .||:|.  |:..|   ||..|....|||.||:.|..:||..|..|.:|||.|||.  |||:...:
  Rat   436 VLDSPF--PTGSG---FGFSLRGSVDIDDNGYPDLIVGAYGASKVAVYRAQPVVM--ATVQLMVQ 493

  Fly   523 E-IKP-------EQEKVKITACYRLST-------TSTDKLVQEQELAIRIAMDKQLKRVKFTQTQ 572
            : :.|       ||.|..: :|:.:..       ....||..:.||.:.:...:|.:||....::
  Rat   494 DSLNPTLKNCVLEQTKTPV-SCFNVQMCVGATGHNIPQKLHLKAELQLDLQKPRQARRVLLLASR 557

  Fly   573 TNEISFKVNANFGEQ----CRDFETQVRYSE--KDIFTPIDLEMHYELTKKVPDSEEFCETCAIV 631
              :.|..::.:.|.:    |...:..:|...  :|..:||.|.::..|.   |:.........:.
  Rat   558 --QASLTLSLDLGGRNKPICHTIKAFLRDEADFRDKLSPIVLSLNVSLP---PEETGVAPAVVLH 617

  Fly   632 DPTEPKVSTQNIIFSTGCATD-VCTADLQLRSKDVSPTYILGSADTLRLNYEITNIGETAY---- 691
            ..|..:..|:.|:   .|..| :|...|||.:.......::|:.:.|.|....:|.||.||    
  Rat   618 GVTHVQEQTRIIL---DCGEDNLCVPQLQLTATAGDSPLLIGADNVLELKVNASNDGEGAYEAEL 679

  Fly   692 ---LPQ--------FNVTSTSRLAFAQVPGNCKVVDAVMVCDLNRGRPLAKGDTDSVT--ISFDV 743
               ||.        .||....||...|...|   ...:.:|:|  |.|:.|.....:|  :|.::
  Rat   680 AVHLPPGAHYIRAFSNVKGFERLVCTQKKEN---ESRLALCEL--GNPMKKDTRIGITMLVSVEI 739

  Fly   744 SQLSGQSLIIHAEVFSTGYEQNPTDNRQTNVIGLKEFTEIDASGGQ-------TNSQIDLEH--- 798
            .:.:|.|:....::.|.. .|||........:.::....::..|..       ...::|.|.   
  Rat   740 LEEAGDSVSFQLQIRSKN-SQNPNSEAVLLPVAVRAEAAVELRGNSFPASLVVAAEEVDKEQDGL 803

  Fly   799 YSNSAEIVNNYEIKSNGPSVIEQLTVSFYIPIAYKVAGSTAIIPIINVTSLKMQASYDSQLLSID 863
            .|..:.:.:.||:.:|||..:..|::..::|...:.:....|:.:.....|........:||.:|
  Rat   804 DSWVSRVEHTYELHNNGPGTVNGLSLIIHLPGQSQPSDLLYILDVQPKGGLLCSTQPPPKLLKVD 868

  Fly   864 LYDQNNTMLVVDPVEVTTTLSGGLERTVITQNRQSYDIHTSGHVHQTMEVLDTSMVATASMSRKR 928
            .             .:||.....:.|                 :|...:..:.|  ...|...::
  Rat   869 R-------------RLTTPSPSSIRR-----------------IHHDRDRREAS--PQGSKQTEQ 901

  Fly   929 RDLKALTANREQYARISNVKAHDLLSDDFKGKLPVNRTIVFNCRDPEMTICVRAEMRVHFRPEKS 993
            :|...::.|                     |..|..   |..|...||....||.:.|......|
  Rat   902 QDPVLVSCN---------------------GSAPCT---VVECELQEMVRGQRAMVTVQATLGLS 942

  Fly   994 INLNMRYSVDLNEVNAILVDPWEYFVILTDLKLQKKGDPTSTSF----SINRRIEPNIISKHQET 1054
            | |..|              |.|.||:.:.........|.|...    |....::.:::...:|.
  Rat   943 I-LRQR--------------PQEQFVLQSHAWFNVSSLPYSVPVVSLPSGQGLVQTHLLRALEER 992

  Fly  1055 GLPIWIIIVSVIGGLLLLSAISYLLYKFGFFNRTKKDELDRLVQQNPVEPEAE 1107
            .:|:|.::|.|:||||||:.:...::|.|||.|.:.          |:|.|.|
  Rat   993 DIPVWWVLVGVLGGLLLLTLLVLAMWKAGFFKRNRP----------PLEEEEE 1035

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scbNP_523750.2 Int_alpha 51..103 CDD:214549 18/58 (31%)
FG-GAP 350..388 CDD:280083 17/42 (40%)
Int_alpha 409..459 CDD:214549 29/52 (56%)
Int_alpha 473..>515 CDD:214549 19/41 (46%)
Integrin_alpha2 507..829 CDD:285619 77/370 (21%)
Itga2bXP_001063315.1 Int_alpha 46..102 CDD:214549 18/60 (30%)
Int_alpha 315..375 CDD:214549 25/65 (38%)
Int_alpha 383..437 CDD:214549 29/53 (55%)
Int_alpha 444..>484 CDD:214549 18/42 (43%)
Integrin_alpha2 480..920 CDD:285619 94/512 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335740
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.740

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