DRSC/TRiP Functional Genomics Resources

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Protein Alignment scb and Itgad

DIOPT Version :10

Sequence 1:NP_523750.2 Gene:scb / 36692 FlyBaseID:FBgn0286785 Length:1115 Species:Drosophila melanogaster
Sequence 2:NP_113879.2 Gene:Itgad / 64350 RGDID:71075 Length:1161 Species:Rattus norvegicus


Alignment Length:1283 Identity:263/1283 - (20%)
Similarity:440/1283 - (34%) Gaps:423/1283 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 FGYTLV-IRQTSIIVGAPRAQSTLESQRTINETGAIYRCSLTNGVCSPYVL-------------- 102
            ||.|:| ...:.::||||     ||:. .:|:||.:|.|:...|:|.|.||              
  Rat    37 FGQTVVQFGGSRLVVGAP-----LEAV-AVNQTGRLYDCAPATGMCQPIVLRSPLEAVNMSLGLS 95

  Fly   103 --------------------------------------------------------------DSR 105
                                                                          |..
  Rat    96 LVTATNNAQLLACGPTAQRACVKNMYAKGSCLLLGSSLQFIQAVPASMPECPRQEMDIAFLIDGS 160

  Fly   106 GNVD---------------------------APYSE----------------------------- 114
            |:::                           ..||.                             
  Rat   161 GSINQRDFAQMKDFVKALMGEFASTSTLFSLMQYSNILKTHFTFTEFKNILDPQSLVDPIVQLQG 225

  Fly   115 --YTFDSERKDFQWLGGSMDGGTKDTDKLLVCA--------PRFYA---PSSRDNHLHGVCYWVN 166
              ||....|...:.|..|.:|..|...|:|:..        |..|:   |::....:  :.|.:.
  Rat   226 LTYTATGIRTVVEELFHSKNGSRKSAKKILLVITDGQKYRDPLEYSDVIPAADKAGI--IRYAIG 288

  Fly   167 --------------NTVASTP--QHVTRI---SPLRLKSEQVKEE-------DNGNKASFFYIMG 205
                          ||:.|.|  .||.::   :.||....|::|:       .:.:.:||.:.|.
  Rat   289 VGDAFQEPTALKELNTIGSAPPQDHVFKVGNFAALRSIQRQLQEKIFAIEGTQSRSSSSFQHEMS 353

  Fly   206 ELGLSAHVADDNTKFLIGAPGINTWRGSVILYRQVDPVDNPTASRRDTSKALRRTYRDVDSNDYT 270
            :.|.|:.:..|..  ::||.|..:|.|...||   .|...||        .:..:..:||.    
  Rat   354 QEGFSSALTSDGP--VLGAVGSFSWSGGAFLY---PPNTRPT--------FINMSQENVDM---- 401

  Fly   271 PEHYAPEIPTPGLWGQEEDSYFGYAVSSGFFDSSNPTKLLYVATAPQANKQSGEAYIFDVRGKSI 335
                             .|||.||:.:..|:...:.    .:..||: ::.:|:..||....:..
  Rat   402 -----------------RDSYLGYSTAVAFWKGVHS----LILGAPR-HQHTGKVVIFTQEARHW 444

  Fly   336 HKYHVFRGEQFGEYFGYSVLAEDLNGDGKTDVIVSAPQHALEDSHDNGAIYVFI---NKGFFNFE 397
            ......||.|.|.|||.|:.:.|::.||.||:::....|..|.:. .|.:.|..   .:|.:..|
  Rat   445 RPKSEVRGTQIGSYFGASLCSVDVDRDGSTDLVLIGAPHYYEQTR-GGQVSVCPVPGVRGRWQCE 508

  Fly   398 RQILRSPVETMARFGTALSRLGDINHDGYNDVAVGAP--FAGNGTVFIYLGSENGLRDQPSQRLD 460
            ..:.........|||.||:.|||:|.|...|||:|||  ....|.|:|:.|:.. |...||    
  Rat   509 ATLHGEQGHPWGRFGVALTVLGDVNGDNLADVAIGAPGEEESRGAVYIFHGASR-LEIMPS---- 568

  Fly   461 APSQQPSKYGSHM------FGHGLSRGSDIDGNGFNDFAIGAPNAEAVYLYRAYPVVKVHATVKS 519
             |||:.:  ||.:      ||..||.|.|:..:|..|.|:||..  .|.|.|:.|::||..:::.
  Rat   569 -PSQRVT--GSQLSLRLQYFGQSLSGGQDLTQDGLVDLAVGAQG--HVLLLRSLPLLKVELSIRF 628

  Fly   520 ESREIKPE-----------QEKVKITACYRLSTTSTDKLVQEQ-ELAIRIAMD--KQLKRVKFTQ 570
            ...|:...           .|..:.|.|..:...|.|.|...| .:...:|:|  :.:.|..|.:
  Rat   629 APMEVAKAVYQCWERTPTVLEAGEATVCLTVHKGSPDLLGNVQGSVRYDLALDPGRLISRAIFDE 693

  Fly   571 TQTNEISFKVNANFGEQCRDFETQVRYSEKDIFTPIDLEMHYELTKKVPDSEEFCETCAIVDPTE 635
            |:...::.:.....|:.|...:..:....:|..:||.|.:::.|.:               |...
  Rat   694 TKNCTLTGRKTLGLGDHCETVKLLLPDCVEDAVSPIILRLNFSLVR---------------DSAS 743

  Fly   636 PK-------VSTQNII-----FSTGCATD-VCTADLQLRSKDVSPTYIL--GSADTLRLNYEITN 685
            |:       |.:|:.|     |...|..: :|..||.: |.:.|...:|  |.:..|.:...:.|
  Rat   744 PRNLHPVLAVGSQDHITASLPFEKNCKQELLCEGDLGI-SFNFSGLQVLVVGGSPELTVTVTVWN 807

  Fly   686 IGETAYLPQFNVTSTSRLAFAQVPGN-----------CKVVDAVM------VCDLNRGRPL-AKG 732
            .||.:|.........:.|::.:|.|.           |:...|..      .|.:|  .|: .:|
  Rat   808 EGEDSYGTLVKFYYPAGLSYRRVTGTQQPHQYPLRLACEAEPAAQEDLRSSSCSIN--HPIFREG 870

  Fly   733 DTDSVTISFDVSQLS--GQSLIIHAEVFSTGYEQNPTDNRQTNV-----IGLKEFTEIDASGGQT 790
            ...:..|:||||..:  |..|::.|:..|   |.|..|..:|..     :....:|.|......|
  Rat   871 AKTTFMITFDVSYKAFLGDRLLLRAKASS---ENNKPDTNKTAFQLELPVKYTVYTLISRQEDST 932

  Fly   791 NS-QIDLEHYSNSAEIVNNYEIKSNGPSVIEQLTVSFYIPIAYKVAGSTAIIPIINVTSLKMQAS 854
            |. .....|.....|..:.|.:.:..|..: .:.|:|::|:            ::|         
  Rat   933 NHVNFSSSHGGRRQEAAHRYRVNNLSPLKL-AVRVNFWVPV------------LLN--------- 975

  Fly   855 YDSQLLSIDLYDQNNTMLVVDPVEVTTTLSGGLER-TVITQNR--QSYDIHTSGHVHQTMEVLDT 916
                  .:.::|              .|||...:. :.::|.:  |:.|..|.   .|...|||.
  Rat   976 ------GVAVWD--------------VTLSSPAQGVSCVSQMKPPQNPDFLTQ---IQRRSVLDC 1017

  Fly   917 SMVATASMSRKRRDLKALTANREQYARISNVKAHDLLSDDFKGKLPVNRTIVFNCRDPEMTICVR 981
            |:.                               |.|.              |.|..|.:.|  :
  Rat  1018 SIA-------------------------------DCLH--------------FRCDIPSLGI--Q 1035

  Fly   982 AEMRVHFRPEKSINLNMRYSVDLNEVNAILVDPWEYFVILTDLKLQKKGDPTSTSFSINRRIEPN 1046
            .|:....|.    ||:..:.....:...:||...| ....|.:..|..|........:...:|..
  Rat  1036 DELDFILRG----NLSFGWVSQTLQEKVLLVSEAE-ITFDTSVYSQLPGQEAFLRAQVETTLEEY 1095

  Fly  1047 IISKHQETGLPIWIIIVSVIGGLLLLSAISYLLYKFGFFNRTKKDELD 1094
            ::.:      ||:::..|.:||||||:.|:.:|||.|||.|..|:.||
  Rat  1096 VVYE------PIFLVAGSSVGGLLLLALITVVLYKLGFFKRQYKEMLD 1137

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scbNP_523750.2 Int_alpha 51..103 CDD:214549 20/126 (16%)
FG-GAP 350..388 CDD:460357 11/37 (30%)
Int_alpha 409..459 CDD:214549 23/51 (45%)
Int_alpha 473..>515 CDD:214549 17/47 (36%)
Integrin_alpha2 509..829 CDD:462478 74/374 (20%)
ItgadNP_113879.2 FG-GAP 1. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 21..78 17/46 (37%)
FG-GAP 2. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 79..138 2/58 (3%)
vWA_integrins_alpha_subunit 151..326 CDD:238746 25/176 (14%)
FG-GAP 3. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 341..392 16/63 (25%)
FG-GAP 4. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 393..444 13/76 (17%)
FG-GAP 5. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 445..505 18/60 (30%)
Int_alpha 455..511 CDD:214549 16/56 (29%)
FG-GAP 6. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 508..566 22/58 (38%)
Int_alpha 518..>559 CDD:214549 19/40 (48%)
FG-GAP 7. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 571..631 20/63 (32%)
Int_alpha 583..>607 CDD:214549 9/23 (39%)
Integrin_alpha2 622..>921 CDD:462478 62/319 (19%)
Integrin_alpha 1124..1137 CDD:459778 6/12 (50%)
GFFKR motif 1126..1130 3/3 (100%)

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