DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scb and itga1

DIOPT Version :9

Sequence 1:NP_523750.2 Gene:scb / 36692 FlyBaseID:FBgn0286785 Length:1115 Species:Drosophila melanogaster
Sequence 2:XP_021334930.1 Gene:itga1 / 570868 ZFINID:ZDB-GENE-091118-115 Length:1183 Species:Danio rerio


Alignment Length:1372 Identity:266/1372 - (19%)
Similarity:480/1372 - (34%) Gaps:480/1372 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 STMFPHIFLALLALISHIEAFNFMPRPSRVINSPKHLKFHINQTRSSYFGYTLVIRQTS----II 65
            |.::.....|||||:..:..||...:.....:.|.          ...||||:...:.|    ::
Zfish     3 SGVYQFTLAALLALLPWLSCFNVDEKNRMSFSGPV----------EDMFGYTVQQFENSEGKWVL 57

  Fly    66 VGAPRAQSTLESQRTINETGAIYRC---SLTNGVCSPYVLDSRGNVDAPYSEYTFDSERKDFQWL 127
            :|:|     |..| ....||.:|||   |.::..|..::|..  |...|..     :|.|:...:
Zfish    58 IGSP-----LTGQ-PAKRTGDVYRCRVGSNSDSKCEKFLLSE--NTTIPNI-----NEVKENMTM 109

  Fly   128 GGSM----DGGTKDTDKLLVCAPRFYAPSSRDNHLHGVC------YWVNNTVASTPQ-------- 174
            |.::    ||     :..|.|.|::.....:..::.|:|      :.|.|::|.|.:        
Zfish   110 GTTLVVNPDG-----NGFLACGPQYGYMCGKQQYITGICSNVSSSFKVLNSIAPTVRECSQDMDI 169

  Fly   175 --------------HVT----------RISPLRL--------------------KSEQVK----- 190
                          |:|          .|.|.|:                    ..|.||     
Zfish   170 VIVLDGSNSIYPWDHITDFLVKFLQNIEIGPARVGIVSYGDDVGHVFNLSQFSNTKELVKNAADI 234

  Fly   191 ---------------------------------------------------------EEDN---- 194
                                                                     :||.    
Zfish   235 RQRTGHKTMTALGIDTARKEAFTVERGARPGVKKVMVIVTDGESHDHHNLKSVIDQCQEDGIERF 299

  Fly   195 -----------------------------------------------------GNK--------- 197
                                                                 |:|         
Zfish   300 AVAVLGDYNRQNKSIDEIKKFIEEIEYIASETKSDHFFNVSDERALVTIVDTLGSKIFALEATSG 364

  Fly   198 ---ASFFYIMGELGLSAHVADDNTKFLIGAPGINTWRGSVILYR-------QVDPVDNPTASRRD 252
               :||...|.:.|.|||.:  ....::||.|...|.|:|::..       :.:...||:..|.:
Zfish   365 KHTSSFEMEMSQAGFSAHTS--KAGVMLGAVGAFDWNGTVVMQAGNEFVVPKKNTFHNPSVQRYE 427

  Fly   253 TSKALRRTYRDVDSNDYTPEHYAPEIPTPGLWGQEEDSYFGYAVSSGFFDSSNPTKLLYVATAPQ 317
                                         |:.|     |.||.|.|.:    .|..:||:..||:
Zfish   428 -----------------------------GMAG-----YVGYDVQSAY----TPNGVLYITGAPR 454

  Fly   318 ANKQSGEAYIFDVRGKSIHKYHVFRGEQFGEYFGYSVLAEDLNGDGKTDV-IVSAPQHALEDSHD 381
            .| .||...::...|:::......:|||.|.|||..:...|::||..||: :|:||.....:..:
Zfish   455 FN-HSGRVTVYRFDGENVTIVQTLKGEQIGSYFGSVLQTHDIDGDNYTDILLVAAPMFMGPERDE 518

  Fly   382 NGAIYVF-INKGFFNFERQILRSPVETM--------------------ARFGTALSRLGDINHDG 425
            .|.:||: :|:... ||.::...||...                    ||||||::.:.|:|.|.
Zfish   519 QGQVYVYKLNESGL-FEHEMTLKPVNQTCCSGHSHNNCKIVSKNEPCGARFGTAIAAVPDLNLDK 582

  Fly   426 YNDVAVGAPFAGN--GTVFIYLGSENGLRDQPSQRLDAPSQQPSKYGSHMFGHGLSRGSDIDGNG 488
            ::|:.:|:|...:  |.|:||.||:..::::..||:.|.....|   ...||..:....|::.:|
Zfish   583 FSDIVIGSPLENDHRGAVYIYHGSQKSIKEKYVQRIAAGGDGES---MKFFGQSIHGIMDLNDDG 644

  Fly   489 FNDFAIGAPNAEAVYLYRAYPVVKVHATVKSESREIKPEQE---------KVKITACYRLSTTST 544
            ..|..||.....|:|..|  .|.::.|.:..:..:|..:..         .||...|::....|.
Zfish   645 IIDVTIGGIGGAALYWSR--DVAELLAEMTFDPIKINLQHTCQVHGKTTVCVKTRVCFKYRIKSV 707

  Fly   545 DKLVQEQELAIRIAMD--KQLKRVKFTQTQTNEISFKVNANFGEQCRD--FETQVRYSEKDIFTP 605
            .::.....:...:.:|  :.:.|.:|.:|:...:. |..:...:.||:  |.|..:...:|   |
Zfish   708 KEMNTGTVIRYSLTLDSLRAVARGRFNETEDRRLQ-KNESIRNKFCREHTFYTSDKLDFRD---P 768

  Fly   606 IDLEMHYELTKK----VPDSE---EFCETCAIVDPTEPKVSTQNIIFSTGC-ATDVCTADLQLR- 661
            |.:.:.:.|..:    |.|.|   ...:|.|:||                | :.:.|.|:|.|: 
Zfish   769 IMVTLEFGLADEDKGPVLDGELPTSLNKTIALVD----------------CGSNEKCVANLHLQA 817

  Fly   662 SKDVSPTYILGSADTLRLNYEITNIGETAYLPQFNVTSTSRLAFAQV---PGNCKVVDAVMVCDL 723
            |.::|...|..:.:...:|.:|.|.|:.||..:..::.|..:.:.:|   ..:|:.....:||.:
Zfish   818 SANISSLLIKSNQEKFYVNIDIKNTGDNAYNTKVTLSHTENINYVKVEPKDKDCETNHTRIVCAV 882

  Fly   724 NRGRPLAKGDTDSVTISFDVSQLSGQSLIIHAEVFSTGYEQNPTDNRQTNVIGLKEFTEIDASGG 788
              |.|..|..                    ..|.|...:|.||:..|:..||.:...|:.:.|  
Zfish   883 --GYPFLKTK--------------------DRETFKIQFEPNPSLIRKDIVINVTATTDSEQS-- 923

  Fly   789 QTNSQIDLEHYSNSAEIVNNYEIKSNGPSVIEQLTVSFYIPIAYKVAGSTAIIPIINVTSLKMQA 853
                         .:.:..|:|                           |.|||:.:..|::..|
Zfish   924 -------------DSALKRNFE---------------------------TIIIPVRHEASMRFTA 948

  Fly   854 SYDSQLLSIDLYDQ-------NNTMLVVDPVEVTTTL-------SGGLERTVITQNRQSYDIHTS 904
            :...:...|.|.::       |:|.::.|.|:::.|:       |..::.|::      :...||
Zfish   949 NKYMKEDHIILKEKETIPSVFNHTSVIGDEVKISYTIEKDPDMPSPPVKLTIM------FPYQTS 1007

  Fly   905 GHVHQTMEVLDTSMVATASMSRKRRDLKALTANREQYARISNVKAHDLLSDDFKGKLPVNRTIVF 969
            .. :..:.:.|.|..|....|          |:.....:|...|.|.|  :..|..|.:   .:.
Zfish  1008 AK-NFLLYLTDLSYTAGIRCS----------ADWINPLKIQPSKPHSL--NTKKETLSI---YLL 1056

  Fly   970 NCRDPEMTICVRAEMRVHFRPEKSINLNMRYSVDLNEVN--------AILVDPWEYFVILTDLKL 1026
            :|::.|             .|.:|.:..:. |.|.|::|        ..:...:....:..|.||
Zfish  1057 SCKEKE-------------NPCQSFSCFIP-SGDFNQINTTFRLWRPTFIKGEFSTIHMAVDAKL 1107

  Fly  1027 QKKGDPTSTSFSINRRI---EPNI-ISKHQETGLPIWIIIVSVIGGLLLLSAISYLLYKFGFFNR 1087
            :.:   .:..|.:|..|   |..| ::|...||:|:||||:|::.|||:|:.:.:.|:|.|||.|
Zfish  1108 ETQ---NTDLFVLNENIKTREVRIQVTKDIRTGIPLWIIILSILIGLLILALVIFALWKAGFFKR 1169

  Fly  1088 TKKDELD 1094
            ...:|::
Zfish  1170 KSVEEMN 1176

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scbNP_523750.2 Int_alpha 51..103 CDD:214549 16/58 (28%)
FG-GAP 350..388 CDD:280083 12/38 (32%)
Int_alpha 409..459 CDD:214549 19/51 (37%)
Int_alpha 473..>515 CDD:214549 11/41 (27%)
Integrin_alpha2 507..829 CDD:285619 61/346 (18%)
itga1XP_021334930.1 vWFA 167..348 CDD:320736 10/180 (6%)
Int_alpha 482..532 CDD:214549 16/49 (33%)
Int_alpha 565..618 CDD:214549 19/52 (37%)
Integrin_alpha2 661..1070 CDD:312071 94/529 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574929
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23220
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.840

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