DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scb and itga11b

DIOPT Version :9

Sequence 1:NP_523750.2 Gene:scb / 36692 FlyBaseID:FBgn0286785 Length:1115 Species:Drosophila melanogaster
Sequence 2:XP_695559.7 Gene:itga11b / 567175 ZFINID:ZDB-GENE-071009-4 Length:1219 Species:Danio rerio


Alignment Length:1369 Identity:283/1369 - (20%)
Similarity:479/1369 - (34%) Gaps:452/1369 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 MFPHIFLALLALISHIEAFNFMPRPSRVINSPKHLKFHINQTRSSYFGYTLVIRQTS----IIVG 67
            :..:.:|.||.:.:      .||.|....|........|..:|.:.||||:...:..    ::||
Zfish    35 LMEYTYLLLLWVSA------LMPGPRTCFNIDTRRAKVIKGSREAQFGYTVQQHEADGQKWLLVG 93

  Fly    68 APRAQSTLESQRTINETGAIYRCSL----------------------------------TN---- 94
            || .:::.|.|     ||.:|||.|                                  ||    
Zfish    94 AP-FETSGEHQ-----TGDVYRCPLESKRTNCTRLHLGKISLNNVSERRDKMRLGMTLATNPKDN 152

  Fly    95 --------------------GVCS-------------------------PYVLDSRGNVDAPY-- 112
                                |:||                         ..|||...::...|  
Zfish   153 SFVACGPLWSYECGSSYYSTGICSRVDSNFNFTHSIAPAYQRCETYMDIVIVLDGSNSIYPWYEV 217

  Fly   113 ------------------------------SEYTFDSER---------KDFQWLGGS-------- 130
                                          :|:..|..|         |:....||.        
Zfish   218 QDFLINVLQKFYIGPGQIQVGVVQYGERVVNEFRLDDFRTVDEVVAAAKNIDQRGGEETRTALGI 282

  Fly   131 --------MDGGTKDTDKLLVC--------APRFYA---PSSRDN-HLHGVC---YW----VN-- 166
                    ..||..|..|:::.        :|...|   .|.:|| .|:|:.   |:    :|  
Zfish   283 NVARTQAFKHGGRPDAKKVMIVITDGESHDSPDLKAAVEESEKDNITLYGIAVLGYYNRRGINPE 347

  Fly   167 ------NTVASTP-QH---VTRISPLR----LKSEQV--KEEDNGNKASFFYIMGELGLSAHVAD 215
                  ..:|:.| :|   ||..|.|:    ...|::  .|..|.|..:|...|.:.|.|:|:.:
Zfish   348 AFLREIKFIATDPDEHFFSVTDESALKDIVDALGEKIFSLEGTNQNGTAFGLQMSQAGFSSHIVE 412

  Fly   216 DNTKFLIGAPGINTWRGSVILYRQVDPVDNPTASRRDTSKALRRTYRDVDSNDYTPEHYAPEIPT 280
            |.  .|:||.|...|.|:|:...:...|..|.:|                        |..|.| 
Zfish   413 DG--ILVGAVGAYDWNGAVLKETRHGKVIPPKSS------------------------YMKEFP- 450

  Fly   281 PGLWGQEE----DSYFGYAVSSGFFDSSNPTKLLYVATAPQANKQSGEAYIFDV--RGKSIHKYH 339
                  ||    .:|.||.|||..   |.....||||.||:.| .:|:..||.:  .|.....|.
Zfish   451 ------EELKNHGAYLGYMVSSVV---SAHHGQLYVAGAPRFN-HTGKVVIFTLTNSGNLTILYS 505

  Fly   340 VFRGEQFGEYFGYSVLAEDLNGDGKTD-VIVSAPQHALEDSHDNGAIYVFI--NKGFFNFERQIL 401
            :: |:|.|.|:|..:...|::.||.|| ::|.||.:... ..:.|.:|::.  .:|.|..:..:.
Zfish   506 LY-GKQIGSYYGSELAPIDVDDDGLTDLLLVGAPMYFYR-GWEKGKVYIYTVGLQGSFIPDGTLG 568

  Fly   402 RSPVETMARFGTALSRLGDINHDGYNDVAVGAPFAGN--GTVFIYLGSENGLRDQPSQRLDAPSQ 464
            .|.....:|||.|:|.|.|:|.||::::.||||...|  |.::::.|.:|.::.:..||:.....
Zfish   569 PSEHSHDSRFGAAMSALPDLNGDGFSELVVGAPLEDNHRGAIYLFYGLKNSIQTKYKQRISGIEL 633

  Fly   465 QPSKYGSHMFGHGLSRGSDIDGNGFNDFAIGAPNAEAVYLYRAYPVVKVHATVKSESREIK---- 525
            .|   |...||..:....|::|:|..|.::|:..| ||.|: :..||:|...|..|..:|.    
Zfish   634 AP---GLRYFGRSVHGMMDLNGDGLVDLSVGSFGA-AVLLW-SRSVVRVGIGVHFEPSKINVFNK 693

  Fly   526 ------PEQEKVKITACYRLSTTSTDKLVQEQELAIRIAMDKQ----LKRVKFTQT-QTNEISFK 579
                  .|...:..|.|  |:.|:...:...:.:|:|.:...:    ..|.....| ::.:::.:
Zfish   694 DCIRGGREVSCMLATVC--LNVTARTPMTDPKRVALRYSFGFEETGYFPRAVLDSTEESRDVTLR 756

  Fly   580 VNANFGEQCRDFETQVRYSEKDIFTPIDLEMHYELTKKVPDSEEFCETCAIVDPTEPKVSTQNII 644
            ..|   :.|:.....| :...|...|:...::..|.:        .:...::|...|......:.
Zfish   757 PAA---QHCQQLHFHV-HEVTDYTRPLTFTVNVGLQR--------ADEGPVLDDGWPTSLRSELP 809

  Fly   645 FSTGCAT-DVCTADLQLR------------SKDVSPTY---------------ILGSADTLRLNY 681
            |..||.. |.|..:|.|:            |:|...::               :..|...:.:..
Zfish   810 FWNGCDNDDQCVPNLILQSSSDLLDLREFCSRDERSSWPPCVDQSSIKTPERLVESSRRKVVVET 874

  Fly   682 EITNIGETAYLPQFNVTSTSRLAFA----QVPGNCKVV-----DAVMVCDLNRGRPLAKGDTD-S 736
            .:.|.||.||....::|.:..|.|:    :.|.:..:.     |..:....|...|..:.... .
Zfish   875 HLENRGENAYNSILHITHSPNLHFSSLVVKAPSDIAIECPNSDDTSLYRTCNVSAPFMRASAQVY 939

  Fly   737 VTISFDVSQLSGQSLI-IHAEVFSTGYEQNPTDNRQTNVIGLKEFTEIDASGGQTNSQIDLEHYS 800
            ..:.|:.|:....:.: |...|.|.|.|..|.||             ::........:.||....
Zfish   940 FRLEFEFSRSVFLNYVNISLRVSSEGEEMFPEDN-------------VNNIHHNLRYEADLLFTR 991

  Fly   801 NSAEIVNNYEIKSNGPSVIEQLTVSFYIPIAYKVAGSTAIIPIINVTSLKMQASYDSQLLSIDLY 865
            :|:.  :.:|||   |...:.::|           ||.   |..|:       ||  |:.::.|:
Zfish   992 DSSP--SRFEIK---PEQAQSVSV-----------GSG---PPFNL-------SY--QIQNLGLF 1028

  Fly   866 DQNNTMLVVDPVEVT---TTLSGGLERTVITQNRQSYDIHTSGHVHQTM--EVLDTSMVATASMS 925
            ..:..:..::...||   .||                 :|.|....|.|  .:.....|.||..|
Zfish  1029 PVSELLFTLNVFAVTRKANTL-----------------LHLSDLYIQQMPGSLCSFPRVITAGSS 1076

  Fly   926 RKRRDLKALTANREQYARISNVKAHDLLSDDFKGKLPVNRTIVFNCR-----DPEMTICVRAEMR 985
            .:..|| :|.|:       .|....|.|              :..||     ..:::|.|...:.
Zfish  1077 SQEEDL-SLNAH-------MNASTSDAL--------------LAQCRFNLSPQADVSITVTGWLN 1119

  Fly   986 VH------FRPEKSINLNMRYSVDLNEVNAILVD---PWEYFVILTDLKLQKKGDPTSTSFSINR 1041
            :|      |   |.::|.|..:|:|:..|.:.:.   |..:.::                     
Zfish  1120 LHTLLAVKF---KRLDLVMTATVELSPSNPMFLHEERPMRHIIL--------------------- 1160

  Fly  1042 RIEPNIISKHQETGLPIWIIIVSVIGGLLLLSAISYLLYKFGFFNR--TKKDELDRLVQQNPVEP 1104
                 .|.|.::..:|:|:||.|.:|||.||:.:...|:|.|||:|  .|:||      |...|.
Zfish  1161 -----EIRKEEDYRIPVWVIIGSTLGGLQLLALLVLALWKLGFFHRQKRKRDE------QEANEK 1214

  Fly  1105 EAEN 1108
            .||:
Zfish  1215 TAED 1218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scbNP_523750.2 Int_alpha 51..103 CDD:214549 22/138 (16%)
FG-GAP 350..388 CDD:280083 11/38 (29%)
Int_alpha 409..459 CDD:214549 19/51 (37%)
Int_alpha 473..>515 CDD:214549 14/41 (34%)
Integrin_alpha2 507..829 CDD:285619 63/375 (17%)
itga11bXP_695559.7 Int_alpha 73..123 CDD:214549 16/55 (29%)
vWA_integrins_alpha_subunit 199..376 CDD:238746 30/176 (17%)
Int_alpha 574..628 CDD:214549 19/53 (36%)
Int_alpha 639..>665 CDD:214549 7/25 (28%)
Integrin_alpha2 671..1071 CDD:312071 79/471 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574924
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23220
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.840

Return to query results.
Submit another query.