DRSC/TRiP Functional Genomics Resources

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Protein Alignment scb and itga11a

DIOPT Version :9

Sequence 1:NP_523750.2 Gene:scb / 36692 FlyBaseID:FBgn0286785 Length:1115 Species:Drosophila melanogaster
Sequence 2:NP_001166098.1 Gene:itga11a / 541475 ZFINID:ZDB-GENE-050324-1 Length:1190 Species:Danio rerio


Alignment Length:1380 Identity:286/1380 - (20%)
Similarity:463/1380 - (33%) Gaps:506/1380 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 EAFNFMPRPSRVINSPKHLKFHINQTRSSYFGYT----LVIRQTSIIVGAPRAQSTLESQRTINE 83
            :.||...|..|:|..|          |.:.||||    :...|..::||||     ||:... ::
Zfish    21 DCFNIDTRNHRIIKGP----------RQTQFGYTVQQHIAGGQKWLLVGAP-----LETNGQ-HQ 69

  Fly    84 TGAIYRCSLTNGVCSPYVLDSRGNVDAPYSEYTFDSERKDFQWLGGSMDGGTKDTDKLLVCAPRF 148
            ||.:|:|.|:.....|    |...::......|..||||:...||.::....|| :..:.|.|.:
Zfish    70 TGDVYKCPLSRRSGGP----SCSKLNLGKISLTNVSERKERMRLGMTLSSNPKD-NSFVACGPLW 129

  Fly   149 YAPSSRDNHLHGVCYWVN------NTVASTPQ-----------------------------HVTR 178
            ........:..|:|..||      .|:|...|                             ::.|
Zfish   130 SYECGSSYYSTGICSRVNASFKFSRTIAPAFQRCETYMDIVIVLDGSNSIYPWNEVQDFLINILR 194

  Fly   179 --------------------ISPLRL---------------------------------KSEQVK 190
                                :|..:|                                 :||..|
Zfish   195 KFYVGPGQIQVGVLQYGEKVVSEFQLNDFRSVEDVVKAARKIGQRGGEETNTALGINVARSEAFK 259

  Fly   191 E-------------------------------EDNG----------------------------- 195
            :                               |.:|                             
Zfish   260 QGGRRGAKKVMIVITDGESHDSADLQQVIEESEKDGITRYAIAVLGYYNRRGINPEAFLNEIKYI 324

  Fly   196 -------------------------------------NKASFFYIMGELGLSAHVADDNTKFLIG 223
                                                 |..:|...|.:.|.|.|..:|.  .|:|
Zfish   325 ASDPDDKHFFNVTDEAALKDIVDALGERIFSLEGTSKNGTAFGLQMSQAGFSTHTVEDG--ILVG 387

  Fly   224 APGINTWRGSVILYRQVDPVDNPTASRRDTSKALRRTYRDVDSNDYTPEHYAPEIPTPGLWGQEE 288
            |.|...|.|:|:...:...|..|.:|                        |..|.|       ||
Zfish   388 AVGAYDWNGAVLKETRQGKVVPPKSS------------------------YEQEFP-------EE 421

  Fly   289 ----DSYFGYAVSSGFFDSSNPTKLLYVATAPQANKQSGEAYIFDVRGK-SIHKYHVFRGEQFGE 348
                .:|.||.|:|.....|..   ||||.||:.| .:|:..||.::.. .:...|..:|:|.|.
Zfish   422 LKNHGAYLGYTVTSVVSARSGQ---LYVAGAPRFN-HTGKVIIFTLKNTGELTILHSLKGQQIGS 482

  Fly   349 YFGYSVLAEDLNGDGKTD-VIVSAPQHALEDSHDNGAIYVFINKGFFNFERQILRSPVETM---- 408
            |:|..:...|::.||.|| ::|:||.. .....:.|.:|::   ......|.||...:|.:    
Zfish   483 YYGSEIAPVDIDNDGVTDNLLVAAPMF-FSGGWEKGKVYIY---RVTEQPRFILEGSLEVLDQGQ 543

  Fly   409 -ARFGTALSRLGDINHDGYNDVAVGAPFAGN--GTVFIYLGSENGLRDQPSQRLDAPSQQPSKYG 470
             ||||:||:.:.|:|.|.:|||.||||...:  |.::||....|.:..:..||:.|....|   |
Zfish   544 NARFGSALAPVPDLNGDSFNDVVVGAPLEDDHKGAIYIYHSQRNRILRKYKQRIGAVQLGP---G 605

  Fly   471 SHMFGHGLSRGSDIDGNGFNDFAIGAPNAEAVYLYRAYPVVKVHATVKSESREI--------KPE 527
            ...||..:....|::|:...|.|:|:..| ||.|: :..|:::::.|:.|..:|        :..
Zfish   606 LQYFGRSIHGKMDMNGDDLVDLAVGSLGA-AVLLW-SRSVIRINSVVRFEPSKINIFNKDCRRGG 668

  Fly   528 QEKVKITACYRLSTTSTDKLVQEQELAIRIAMDKQLKRVKFTQTQTNEISFKVNANFGEQCRDFE 592
            ::...::|...|:.|:...:...||:|:|                       .:|.|.|:     
Zfish   669 KDVTCMSAIVCLNVTARTPINPSQEIALR-----------------------YSAFFEEK----- 705

  Fly   593 TQVRYSEKDIFTPIDLEMHYELTKKVPDSEEFC--------ETC--------------------A 629
               |::.:.:|...|.:....||  :...||.|        ||.                    .
Zfish   706 ---RFNPRAVFDDPDRQQPQNLT--LLPGEETCDHIYFHVMETTDYARPIIFTVETELLDLYHGP 765

  Fly   630 IVDPTEPKVSTQNIIFSTGC-ATDVCTADLQLR---------------------------SKDVS 666
            ::|.:.|......:.|..|| ..|.|..||.|:                           |.|.|
Zfish   766 VLDDSWPTTVKTQLPFWNGCDEDDHCVPDLLLQAHTDLMNRQQFCGQAFRAASLLCQGHTSTDPS 830

  Fly   667 PTYILGSADTLRLNYEITNIGETAYLPQFNVTSTSRLAFAQVPGNCKVVDAVMVCDLNRGRPLAK 731
            ...|.||...:.::..:.|.||.||..:.|:|.|..|.|:.:                    :.|
Zfish   831 ERIIEGSRRKMVVDVRLENRGENAYGAKLNITYTQNLRFSSL--------------------IVK 875

  Fly   732 GDTDSVTISFDVSQLSGQSLIIHAEVFSTG---YEQ-----NPTDNRQTNVIGLKEFTEIDASGG 788
            .::|                 ||.:..:..   ||:     .|....::.||...|| |...|..
Zfish   876 DNSD-----------------IHIDCRNENKRKYEKTCNISEPFMRAKSQVIFRLEF-EFSHSVL 922

  Fly   789 QTNSQIDLEHYSNSAEIV---NNYEIKSNGPSVIEQLTVSFYIPIAYKVAGSTAI------IPII 844
            ..:.:|.||..|...|::   |:.||..|.....:.|....:.|..|::....::      .|..
Zfish   923 LDHVRIILEVTSEGEEVILYDNSNEIFYNLKYEADLLFTRDFYPTRYELKPDLSLEKADDFNPPF 987

  Fly   845 NVTSLKMQASYDSQLLSIDLYDQNNTMLVVDPVEVTTTLSGGLERTVITQNRQSYDIHTSGHVHQ 909
            |.|         .|:.::..:...:..|.:...|||   ..|      .|..|..|.|..     
Zfish   988 NFT---------FQIQNLGYFPIQDLQLYIAIPEVT---KNG------NQLLQIRDFHID----- 1029

  Fly   910 TMEVLDTSMVATASMSRKRRDLKALTANREQYARISNVKAHDLLSDDFKGKLPVNRTI-VFNCRD 973
              ::..:..:....::..|       |:.|..:|.|.:...:.|:      :||..|: :.:.||
Zfish  1030 --QIGGSQCIPPQHVAHSR-------ASPEDLSRTSRLNYSNTLA------VPVQCTVNLPSYRD 1079

  Fly   974 PEMTICVRAEMR---VHFRPEKSINLNMRYSVDLNEVNAILVDPWEYFVILTDLKLQKKGDPTST 1035
              :::.:...:|   :|....|::.|....||:||                          |:|.
Zfish  1080 --VSVKIGGSLRTDALHALKFKTLELVTTASVELN--------------------------PSSP 1116

  Fly  1036 SFSINRRIEPNI---ISKHQETGLPIWIIIVSVIGGLLLLSAISYLLYKFGFFNRTKKDELDRLV 1097
            .|....|...:|   |.|.::..:||||||.|.:|||||||.:...|:|.|||.|.|:.|     
Zfish  1117 MFLPEERPVRHIILEIRKEEDYRVPIWIIIGSTLGGLLLLSLLILALWKLGFFQRQKRRE----- 1176

  Fly  1098 QQNPVEPEAENLNSG 1112
                   ||||..:|
Zfish  1177 -------EAENEVNG 1184

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scbNP_523750.2 Int_alpha 51..103 CDD:214549 17/55 (31%)
FG-GAP 350..388 CDD:280083 11/38 (29%)
Int_alpha 409..459 CDD:214549 21/51 (41%)
Int_alpha 473..>515 CDD:214549 12/41 (29%)
Integrin_alpha2 507..829 CDD:285619 73/396 (18%)
itga11aNP_001166098.1 Int_alpha 39..88 CDD:214549 18/58 (31%)
vWA_integrins_alpha_subunit 167..345 CDD:238746 8/177 (5%)
Int_alpha 480..527 CDD:214549 13/50 (26%)
Int_alpha 543..587 CDD:214549 19/43 (44%)
VCBS 556..629 CDD:290251 24/75 (32%)
Integrin_alpha2 640..1042 CDD:285619 88/497 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574923
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23220
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.840

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