DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scb and itga6a

DIOPT Version :9

Sequence 1:NP_523750.2 Gene:scb / 36692 FlyBaseID:FBgn0286785 Length:1115 Species:Drosophila melanogaster
Sequence 2:XP_005167466.1 Gene:itga6a / 503893 ZFINID:ZDB-GENE-050309-23 Length:1092 Species:Danio rerio


Alignment Length:1190 Identity:274/1190 - (23%)
Similarity:474/1190 - (39%) Gaps:330/1190 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 SYFGYTLVIR-------QTSIIVGAPRAQSTLESQRTINETGAIYRCSLTN--GVCSPYVLDSRG 106
            |.||:::.:.       :|.:::|||:|::.  |.:..|.||.:|.|.:|.  ..||.  :|...
Zfish    42 SLFGFSIALHRQLQPHDKTILLIGAPKARAL--SNQGANVTGGLYSCDITTHPNDCSR--VDFDN 102

  Fly   107 NVDAPYSEYTFDSERKDFQWLGGSMD----GGTKDTDKLLVCAPRFY-------APSSRDNHLHG 160
            :||...       |.|:.||:|.::.    ||     |::.||.|:.       ...:||  :.|
Zfish   103 DVDVRV-------ENKENQWMGVTVQSQGPGG-----KIVTCAHRYQRLLFPNTPQEARD--ITG 153

  Fly   161 VCYWVNNTVASTPQHVTRISPLRLKSEQVKEEDNGNKASFFYIMG-----------ELGLSAHVA 214
            .||.::..               |..:...:||.||   :.:..|           :.||:|...
Zfish   154 RCYMLSQD---------------LSIDNQSDEDGGN---WKFCDGRTRGHERFGACQQGLAATFT 200

  Fly   215 DDNTKFLIGAPGINTWRGSVILYRQVDPV-------DNPTASRRDTSKALRRTYRDVDSNDYTPE 272
            .|....:.||||...|:|.|.:.::.:.:       |.|              |...|.|...|.
Zfish   201 KDYHYVIFGAPGAYNWKGIVRIEQKNNTLLEMGLFDDGP--------------YEVGDENRLDPN 251

  Fly   273 HYAPEIPTPGLWGQEEDSYFGYAVSSGFFDSSNPTKLLYVATAPQANKQSGEAYIFDVRGK---S 334
                .:|.|.      :||.|:::.|| ...:...||:.|:.||:|| .||........|:   .
Zfish   252 ----LVPVPA------NSYLGFSLDSG-HSITEKGKLIIVSGAPRAN-HSGAVVFLRKEGELSSM 304

  Fly   335 IHKYHVFRGEQFGEYFGYSVLAEDLNGDGKTDVIVSAPQHALEDSHDNGAIYVFINKGFFNFERQ 399
            :...|:..|......|||.|...||||||..||:|.|||....|....||:||:|||.  ...|.
Zfish   305 LTPEHILEGPGLASSFGYDVAVVDLNGDGWQDVVVGAPQFFQRDEEVGGAVYVYINKA--GRWRD 367

  Fly   400 ILRSPVETM----ARFGTALSRLGDINHDGYNDVAVGAPFA--GNGTVFIYLGSENGLRDQPSQR 458
            :  :||...    :.||.::..:||:|.|.:.|:|||||:|  |.|:|:||.||.:|:..:|:|.
Zfish   368 V--TPVRLNGTKDSMFGLSVENIGDVNLDSFEDIAVGAPYADSGFGSVYIYHGSADGISTKPAQI 430

  Fly   459 LDAPSQQPSKYGSHMFGHGLSRGSDIDGNGFNDFAIGAPNAEAVYLYRAYPVVKVHATVKSESRE 523
            |:.     .::.:.|||:.|:...|:|.|.:.|.|:|: .::.|::||:..|:.:...:|...:|
Zfish   431 LEG-----KQHNTKMFGYSLAGNMDLDHNSYPDLAVGS-LSDTVFIYRSKNVISIKKDIKVTPKE 489

  Fly   524 IKPEQEK------VKITAC--YRLS-TTSTDKLV-----------QEQELAIRIAMDKQLKRVKF 568
            |...::.      :.:.||  ||.: ||...|:.           ::..|..|:..   |.:.:.
Zfish   490 IDLTKKTCGNSICLTVEACFSYRANPTTYNPKITISCTFEAEWYRRKLGLPSRVVF---LDKTEI 551

  Fly   569 TQTQTNEISFKVNANFGEQCRDFETQVRYS----EKDIFTPIDLEMHYELTKKVPDSEEFCETCA 629
            .|...:..:.::.....:.|  ::|::|..    :|....||::.:..:..|:........:...
Zfish   552 DQDYQSTGTLELRGQNKKAC--YKTKLRLQDGIRDKLRAIPIEVSVAIQSAKRGKRQSSLPQLVP 614

  Fly   630 IVDPTEP-KVSTQNIIFSTGCATD-VCTADLQLR--------SKDVSPTY-------ILGSADTL 677
            |:|.|.| |..|:......||.|| :|.::|.|:        .:|:.|..       ::..:|..
Zfish   615 ILDSTVPNKTLTEVNFLKEGCGTDNICQSNLNLQYRFCYRESKQDIFPPLPLENGVPVISLSDQK 679

  Fly   678 RLNYEIT-------NIGETAYLPQFNVTSTSRLAFAQVPGNCKVVDAVMVCDLNRGRPLA----- 730
            .:..|:|       :..|...:..|: .|.|...|..:..|    |..::|..|:...||     
Zfish   680 DIALEVTVRNRNGDDAHEAKLVSHFD-DSLSYSGFRSLRTN----DKHVICAANQNGSLADCELG 739

  Fly   731 ---KGDTDSVTISFDVSQLSGQSLIIHAEVFSTGYEQNPTDNRQTNVIGLKEFTEIDASGGQTNS 792
               |.|::   ::|.:             :.|||.....|          || .|||.....|:|
Zfish   740 NPFKRDSE---VTFYI-------------ILSTGKISLET----------KE-VEIDLQLETTSS 777

  Fly   793 QIDLEHYSNSAEIVNNYEIKSNG---PSVI-------------EQLTVSFYIPIAYKVAGSTAII 841
            |..|......|::|....:...|   ||.:             ::..|...|...::|......:
Zfish   778 QEGLSKVKAKAKVVIELLLSVQGVAKPSQVYFGGEVKGMSAMKKEEEVGSLIEYEFRVINLGKPL 842

  Fly   842 PIINVTSLKMQ----ASYDSQLLSIDLYDQNNTMLV-------VDPVEVTTTL------------ 883
            ......||.:|    :|....||.:...:..:..||       ::|:::....            
Zfish   843 KSFGTASLNIQWPKESSVGKWLLYLMKINTRDLQLVTCSPEREINPLKLREDSSIRKKRELEERR 907

  Fly   884 -SGGLERTVITQNRQSYDIHTSG-----HVHQTMEVLDTSMVATASMSRKRRDLKALTANREQYA 942
             |.|.:.::.|..|:...:..||     .:...::.||::.|..         ||         :
Zfish   908 PSEGNKISLFTDKRKHKILSCSGDARCVEIKCPLQGLDSTAVIV---------LK---------S 954

  Fly   943 RISNVKAHDLLSDDFKGKLPVNRTIVFNCRDPEMTICVRAEMRVHFRPEKSINLNMRYSVDLNEV 1007
            |:.|    ....:||..         :|..|    |.|:|.:                |:|::..
Zfish   955 RLWN----STFLEDFAS---------YNYLD----IIVKASI----------------SLDVSAK 986

  Fly  1008 NAILVDPWEYFVILTDLKLQKKGDPTSTSFSINRRIEPNIISKHQETGLPIWIIIVSVIGGLLLL 1072
            |.:|.:|      .|.::|....:.|:|.|.                |:|.|||:|:|:.|:|:|
Zfish   987 NIVLKNP------ETQVRLTVFPETTATPFG----------------GVPWWIILVAVLAGILML 1029

  Fly  1073 SAISYLLYKFGFFNRTKKDE 1092
            :.:..||:|.|||.|:|.::
Zfish  1030 ALLVLLLWKCGFFKRSKYED 1049

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scbNP_523750.2 Int_alpha 51..103 CDD:214549 17/60 (28%)
FG-GAP 350..388 CDD:280083 20/37 (54%)
Int_alpha 409..459 CDD:214549 23/51 (45%)
Int_alpha 473..>515 CDD:214549 14/41 (34%)
Integrin_alpha2 507..829 CDD:285619 73/393 (19%)
itga6aXP_005167466.1 Int_alpha 40..101 CDD:214549 18/62 (29%)
Int_alpha 257..>293 CDD:214549 14/43 (33%)
Int_alpha 318..368 CDD:214549 25/51 (49%)
Int_alpha 378..431 CDD:214549 23/52 (44%)
Int_alpha 440..>463 CDD:214549 9/22 (41%)
Integrin_alpha2 476..939 CDD:285619 90/499 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574964
Domainoid 1 1.000 61 1.000 Domainoid score I10420
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.740

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