DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scb and Itgax

DIOPT Version :9

Sequence 1:NP_523750.2 Gene:scb / 36692 FlyBaseID:FBgn0286785 Length:1115 Species:Drosophila melanogaster
Sequence 2:XP_574569.3 Gene:Itgax / 499271 RGDID:1561123 Length:1182 Species:Rattus norvegicus


Alignment Length:1374 Identity:285/1374 - (20%)
Similarity:459/1374 - (33%) Gaps:478/1374 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LLALISHIEAFNFMPRPSRVINSPKHLKFHINQTRSSYFGYTLVIRQTS-IIVGAPRAQSTLESQ 78
            ||.:.:....||        :::.|..:||::   .:.||:::|....| ::||||:     |.|
  Rat    10 LLKVFASCLGFN--------LDAEKPTRFHMD---GAEFGHSVVQYGGSWVVVGAPK-----EIQ 58

  Fly    79 RTINETGAIYRCSLTNGVCSP-------------------------------------------- 99
            .| |:.|.:|:|....|:|..                                            
  Rat    59 AT-NQIGGLYKCGYHTGMCESISLQVPPEAVNMSLGLSLTATNPSWLLACGPTVHHICRENTYLT 122

  Fly   100 ---YVLDS--RGNVDAPYSE---------------------YTFDSER----------------- 121
               ::|||  |.|.:.|.::                     || |.|:                 
  Rat   123 GLCFLLDSSFRQNQNFPAAQQGCPRQDQDIVFLIDGSGSITYT-DFEKMLAFVKAVMSQLQQSST 186

  Fly   122 -----------------KDF-------------QWLGGS-----------------MDGGTKDTD 139
                             .||             ..|.||                 ..|..||..
  Rat   187 RFSLMQFSHTFRTHFTFNDFISTSSPLRLLDFVNQLRGSTRTASAIKHVITELFTTQKGARKDAT 251

  Fly   140 KLLV--------------------------------CAPRFYAPSSRDNHLHGVCYWVNNTVAST 172
            |:|:                                ....||...||..         ...:||:
  Rat   252 KILIVITDGRKEGDRLDYGDVIPMAEAAGIIRYAIGVGQAFYQAQSRQE---------LKDIASS 307

  Fly   173 PQH-----VTRISPLRLKSEQVKEE-------DNGNKASFFYIMGELGLSAHVADDNTKFLIGAP 225
            |..     |.....|:....|:||:       :..:.:||...|.:.|.||....|..  ::||.
  Rat   308 PSREYVFSVENFDALKDIQNQLKEKIFAIEGTETPSSSSFELEMSQEGFSAVFTPDGP--VLGAV 370

  Fly   226 GINTWRGSVILYRQVDPVDNPTASRRDTSKALRRTYRDVDSNDYTPEHYAPEIPTPGLWGQEEDS 290
            |...|.|...||   .|...||        .:..:..:||.                     .||
  Rat   371 GSFGWSGGAFLY---PPNTRPT--------FINMSQENVDM---------------------RDS 403

  Fly   291 YFGYAVSSGFFDSSNPTKLLYVATAPQANKQSGEAYIFDVRGKSIHKYHVFRGEQFGEYFGYSVL 355
            |.||:.:..|:...:.    .:..||: ::.:|:..||....:........||.|.|.|||.|:.
  Rat   404 YLGYSTAVAFWKGVHS----LILGAPR-HQHTGKVVIFTQEARHWRPKSEVRGTQIGSYFGASLC 463

  Fly   356 AEDLNGDGKTDVIVSAPQHALEDSHDNGAIYVFINKGF---FNFERQILRSPVETMARFGTALSR 417
            :.|::.|..||:::....|..|.:. .|.:.|....|.   :..|..:.........|||.||:.
  Rat   464 SVDMDRDDSTDLVLIGAPHYYEQTR-GGQVSVCPVPGVGSRWQCEATLHGEQGHPWGRFGAALTV 527

  Fly   418 LGDINHDGYNDVAVGAP--FAGNGTVFIYLG-SENGLRDQPSQRLDAPSQQPS-KYGSHMFGHGL 478
            |||:|.|...|||:|||  ....|.|:|:.| |...:...||||:.|....|. :|    ||..|
  Rat   528 LGDVNGDDLADVAIGAPGEEESRGAVYIFHGASRLEISPSPSQRISASRIFPRLQY----FGQSL 588

  Fly   479 SRGSDIDGNGFNDFAIGAPNAEAVYLYRAYPVVKVHATVKSESREIK-----------PEQEKVK 532
            |.|.|:.|:|..|.|:|:..  .:.|.|..|::::.:|::....||.           .||....
  Rat   589 SGGQDLTGDGLVDLAVGSKG--HLLLLRTRPILRMSSTIQFTPTEISRSVFECQGQVTREQTLGT 651

  Fly   533 ITACYRLSTTSTDKLVQEQELAIRIAMDKQL------KRVKFTQTQTNEISFKVNANFGEQCRDF 591
            .|.|.|   |......|..:|...:..|..|      .|..|.:|:|..::..........|...
  Rat   652 ATVCLR---TYESSKTQRGDLQSIVTFDLALDPGRLSPRAIFKETKTQALTKVRTLGLSSHCEPV 713

  Fly   592 ETQVRYSEKDIFTPIDLEMHYELT-KKVPDSEEFCETCAIVDPTEPKVSTQNIIFSTGCATD-VC 654
            ...:....:|..|||.|.:::.|. ..:|..:......|:.:.|   ..|.::.|...|..| :|
  Rat   714 TLLLPACVEDSVTPITLRLNFSLVGVPIPSLQNLQPMLAVDEQT---YFTASLPFEKNCGADHIC 775

  Fly   655 TADLQL--RSKDVSPTYILGSADTLRLNYEITNIGETAYLPQFNV-----TSTSRLAFAQVPGNC 712
            ..||.:  ...|:. |.::||...|.:...:||.||.:|.....:     .|..|:|.|||  ..
  Rat   776 QDDLGIIFGFPDLK-TLVVGSNLELSVAVTVTNDGEDSYGTTITLFYPVGLSFRRVAEAQV--FL 837

  Fly   713 KVVDAV-----------MVCDLNRGRP--------------LAKGDTDSVTISFDVSQLS--GQS 750
            :..|..           ::||....|.              ...|...:..::||||..:  |..
  Rat   838 RTEDTQQWQQQGRHSLHLMCDSTPDRSQGIWSTSCSSRHVIFRGGSQMTFLVTFDVSPKAELGDR 902

  Fly   751 LIIHAEVFSTGYEQNPTDNRQTN--------------VIGLKEFTE-IDASGGQTNSQIDLEHYS 800
            |::.|.|.|   |....:.|:|.              :....:||: ::.|..:.:....:||  
  Rat   903 LLLRARVSS---ENGVPETRKTTFQLELPVKYAVYTVISSHDQFTKYLNFSASEKSRVSVVEH-- 962

  Fly   801 NSAEIVNNYEIKSNGPSVIEQLTVSFYIPIAYKVAGSTAIIPIINVTSLKMQASYDSQLLSIDLY 865
                   .:::.:.|...: .::::|.:|                 |.||.:..:          
  Rat   963 -------RFQVNNLGQRDL-PVSINFRVP-----------------TELKGETVW---------- 992

  Fly   866 DQNNTMLVVDPVEVTTTLSGGLERTVITQNR---QSYDIHTSGHVHQTMEVLDTSMVATASMSRK 927
                |::|..|...:|.         ..|||   ..:|:.|  |: |...|||.|:   |.....
  Rat   993 ----TVMVSHPQNPSTQ---------CYQNRLKPTQFDLLT--HM-QKSPVLDCSI---ADCLHF 1038

  Fly   928 RRDLKALTANREQYARISNVKAHDLLSDDF--KGKLP---VNRTIVFNCRDPEMTICVRAEMRVH 987
            |.|:.:|....|.               ||  ||.|.   :::|:       :..:.:.:|..:.
  Rat  1039 RCDIPSLGIQDEL---------------DFILKGNLSFGWISQTL-------QKKVLLVSEAEIS 1081

  Fly   988 FRPEKSINLNMRYSVDLNEVNAILVDPWEYFVILTDLKLQKKGDPTSTSFSINRRIEPNIISKHQ 1052
            |  :.|:     || .|....|.|                              |.:.....:..
  Rat  1082 F--DTSV-----YS-QLPGQEAFL------------------------------RAQAKTTLEMY 1108

  Fly  1053 ETGLPIWIIIVSVIGGLLLLSAISYLLYKFGFFNRTKKDEL---------------DRLVQQNPV 1102
            |...|:.:|:.|.:||||||:.|:.:|||.|||.|..|:.|               .::.||...
  Rat  1109 EVHNPVPLIVGSSVGGLLLLALITAVLYKAGFFKRQYKEMLAEANGQFASGNGNPNPQVTQQELP 1173

  Fly  1103 EPEAENLNS 1111
            .|.:.||.|
  Rat  1174 SPSSLNLPS 1182

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scbNP_523750.2 Int_alpha 51..103 CDD:214549 17/99 (17%)
FG-GAP 350..388 CDD:280083 10/37 (27%)
Int_alpha 409..459 CDD:214549 24/52 (46%)
Int_alpha 473..>515 CDD:214549 14/41 (34%)
Integrin_alpha2 507..829 CDD:285619 75/389 (19%)
ItgaxXP_574569.3 vWA_integrins_alpha_subunit 150..325 CDD:238746 23/184 (13%)
Int_alpha 454..510 CDD:214549 15/56 (27%)
Int_alpha 517..572 CDD:214549 24/54 (44%)
Int_alpha 582..>606 CDD:214549 11/27 (41%)
Integrin_alpha2 615..986 CDD:285619 77/409 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335752
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23220
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.840

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