DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scb and ITGA7

DIOPT Version :9

Sequence 1:NP_523750.2 Gene:scb / 36692 FlyBaseID:FBgn0286785 Length:1115 Species:Drosophila melanogaster
Sequence 2:XP_005268896.1 Gene:ITGA7 / 3679 HGNCID:6143 Length:1181 Species:Homo sapiens


Alignment Length:1247 Identity:287/1247 - (23%)
Similarity:480/1247 - (38%) Gaps:311/1247 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 HIFLALLA--LISHIEAFNF-MPRPSRVINSPKHLKFHINQTRSSYFGYTLVIR-------QTSI 64
            ::|.:||.  |.|...|||. :....|....|           .|.||:::.:.       |:.:
Human    17 YLFGSLLVELLFSRAVAFNLDVMGALRKEGEP-----------GSLFGFSVALHRQLQPRPQSWL 70

  Fly    65 IVGAPRAQSTLESQRTINETGAIYRCSLTNGVCSPYVLDSRGNVDAPYSEYTFDSERKDFQWLGG 129
            :||||:|.: |..|:. |.||.::.|.|:......|.:|.....|       ...|.|:.||||.
Human    71 LVGAPQALA-LPGQQA-NRTGGLFACPLSLEETDCYRVDIDQGAD-------MQKESKENQWLGV 126

  Fly   130 SM----DGGTKDTDKLLVCAPRFYAPSSRDNHLH-----GVCYWVNNTVASTPQHVTRISPLRLK 185
            |:    .||     |::.||.|:.|....|..|.     |.|:.::..:|               
Human   127 SVRSQGPGG-----KIVTCAHRYEARQRVDQILETRDMIGRCFVLSQDLA--------------- 171

  Fly   186 SEQVKEEDNGNKASFF---------YIMGELGLSAHVADDNTKFLIGAPGINTWRGS--VILYRQ 239
               :::|.:|.:..|.         :...:.|.:|..:.|:...|.||||...|:|:  |.|..|
Human   172 ---IRDELDGGEWKFCEGRPQGHEQFGFCQQGTAAAFSPDSHYLLFGAPGTYNWKGTARVELCAQ 233

  Fly   240 -------VDPVDNPTASRRDTSKALR------RTY------RDVDSNDYTPEHYAPEIPTPGLWG 285
                   :|  |.|..:..:..:..|      .:|      .::||:|.....|....|...|.|
Human   234 GSADLAHLD--DGPYEAGGEKEQDPRLIPVPANSYFGLLFVTNIDSSDPDQLVYKTLDPADRLPG 296

  Fly   286 QEED----SYFGYAVSSGFFDSSNPTKLLYVATAPQAN---------KQSGEAYIFDVRGKSIHK 337
            ...|    ||.|:::.|| .......:|.:||.||:||         |.|....:.:|       
Human   297 PAGDLALNSYLGFSIDSG-KGLVRAEELSFVAGAPRANHKGAVVILRKDSASRLVPEV------- 353

  Fly   338 YHVFRGEQFGEYFGYSVLAEDLNGDGKTDVIVSAPQHALEDSHDNGAIYVFINKGFFNFERQILR 402
              :..||:....||||:...|||.||..|:||.||..........||:||::|:|........||
Human   354 --MLSGERLTSGFGYSLAVADLNSDGWPDLIVGAPYFFERQEELGGAVYVYLNQGGHWAGISPLR 416

  Fly   403 SPVETMARFGTALSRLGDINHDGYNDVAVGAPFAGNGTVFIYLGSENGLRDQPSQRLDAPSQQPS 467
            ......:.||.:|:.|||:|.||:.|:||||||.|:|.||||.||..|:..:|||.|:..:    
Human   417 LCGSPDSMFGISLAVLGDLNQDGFPDIAVGAPFDGDGKVFIYHGSSLGVVAKPSQVLEGEA---- 477

  Fly   468 KYGSHMFGHGLSRGSDIDGNGFNDFAIGAPNAEAVYLYRAYPVVKVHATVKSESREIKPEQEK-- 530
             .|...||:.||...|:|||.:.|..:|: .|:...|:||.|::.|...|....|.|..||..  
Human   478 -VGIKSFGYSLSGSLDMDGNQYPDLLVGS-LADTAVLFRARPILHVSHEVSIAPRSIDLEQPNCA 540

  Fly   531 ------VKITACYR-LSTTSTDKLVQEQELAIRIAMDKQLK----RVKFTQTQTNEISFKVNA-- 582
                  |.:..|:. ::..|:.......:..:....|::|:    ||.|......|...:.:.  
Human   541 GGHSVCVDLRVCFSYIAVPSSYSPTVALDYVLDADTDRRLRGQVPRVTFLSRNLEEPKHQASGTV 605

  Fly   583 ----NFGEQCRDFETQVRYSEKDIFTPIDLEMHYEL----TKKVPDSEEFCETCAIVDPTEPKVS 639
                .....|.|...|::.:.||....|.:.:.|.|    .::....:.......|::..:|...
Human   606 WLKHQHDRVCGDAMFQLQENVKDKLRAIVVTLSYSLQTPRLRRQAPGQGLPPVAPILNAHQPSTQ 670

  Fly   640 TQNIIF-STGCATD-VCTADLQL-RSK---------------DVSPT---YILGSADTLRLNYEI 683
            ...|.| ..||..| :|.::||| |::               ||..|   :.|.....:.|...:
Human   671 RAEIHFLKQGCGEDKICQSNLQLVRARFCTRVSDTEFQPLPMDVDGTTALFALSGQPVIGLELMV 735

  Fly   684 TNI----------GETAYLPQFNVTSTSRLAFAQVPGNCKVVDAV-------------MVCDLNR 725
            ||:          |:.|:..|..|.....|.::.|    :.:|..             :.|:|  
Human   736 TNLPSDPAQPQADGDDAHEAQLLVMLPDSLHYSGV----RALDPAEKPLCLSNENASHVECEL-- 794

  Fly   726 GRPLAKGDTDSVTISFDVSQLSGQSLIIHAEVFSTGYEQNPTDNRQTNVIGLKEFTEIDASGGQT 790
            |.|:.:|...:..:....|.:|.::..:..|:...                             |
Human   795 GNPMKRGAQVTFYLILSTSGISIETTELEVELLLA-----------------------------T 830

  Fly   791 NSQIDLEHYSNSAEIVNNYEIKSNGPSVIEQLTVSFYIPIAYKVAGSTAIIPIINVTS-LKMQAS 854
            .|:.:|...|..|.:.....:...|.::.:||   |:..:   |.|..|:....:|.| :|.:.:
Human   831 ISEQELHPVSARARVFIELPLSIAGMAIPQQL---FFSGV---VRGERAMQSERDVGSKVKYEVT 889

  Fly   855 YDSQLLSIDL-----------YDQNNTMLVVDPVEVTTTLSGGLERTVITQNRQSYDIHTSGHVH 908
            ..:|..|:..           ::..|...::.|::|......|..:..:...|.:. :|      
Human   890 VSNQGQSLRTLGSAFLNIMWPHEIANGKWLLYPMQVELEGGQGPGQKGLCSPRPNI-LH------ 947

  Fly   909 QTMEVLDTSMVATASMSRKRRDLKALTANREQYAR---------ISNV-KAHDLLSDDFKGKLPV 963
                 ||..     |..|:||:|:. ...:|...|         :|:. |..::..|..:|   .
Human   948 -----LDVD-----SRDRRRRELEP-PEQQEPGERQEPSMSWWPVSSAEKKKNITLDCARG---T 998

  Fly   964 NRTIVFNCRDPEMTICVRAEMRV-----------HFRPEKSINLNMRYSVDLNE--VNAILVDPW 1015
            ...:||:|  |..:....|.:.|           .:...||:.:.:|.::.:..  .|.:|.|  
Human   999 ANCVVFSC--PLYSFDRAAVLHVWGRLWNSTFLEEYSAVKSLEVIVRANITVKSSIKNLMLRD-- 1059

  Fly  1016 EYFVILTDLKLQKKGDPTSTSFSINRRIEPNIISKHQETGLPIWIIIVSVIGGLLLLSAISYLLY 1080
                             .||...:...::|..:...   |:|.|:|:::|:.|||:|:.:..||:
Human  1060 -----------------ASTVIPVMVYLDPMAVVAE---GVPWWVILLAVLAGLLVLALLVLLLW 1104

  Fly  1081 KFGFFNRTKKDE 1092
            |.|||.|.|..|
Human  1105 KMGFFKRAKHPE 1116

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scbNP_523750.2 Int_alpha 51..103 CDD:214549 17/58 (29%)
FG-GAP 350..388 CDD:280083 17/37 (46%)
Int_alpha 409..459 CDD:214549 28/49 (57%)
Int_alpha 473..>515 CDD:214549 16/41 (39%)
Integrin_alpha2 507..829 CDD:285619 68/388 (18%)
ITGA7XP_005268896.1 Int_alpha 48..109 CDD:214549 19/73 (26%)
Int_alpha 304..>345 CDD:214549 13/41 (32%)
Int_alpha 362..415 CDD:214549 20/52 (38%)
Int_alpha 421..473 CDD:214549 28/51 (55%)
Int_alpha 483..>522 CDD:214549 15/39 (38%)
Integrin_alpha2 515..1006 CDD:285619 97/552 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.