DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scb and Itga8

DIOPT Version :9

Sequence 1:NP_523750.2 Gene:scb / 36692 FlyBaseID:FBgn0286785 Length:1115 Species:Drosophila melanogaster
Sequence 2:NP_001167443.1 Gene:Itga8 / 364786 RGDID:621634 Length:1062 Species:Rattus norvegicus


Alignment Length:1180 Identity:290/1180 - (24%)
Similarity:468/1180 - (39%) Gaps:259/1180 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 SPKHLKFHINQTR--------SSYFGYTLVI-----RQTSIIVGAPRAQSTLESQRTINETGAIY 88
            ||..|.|:::..:        .|||||:|..     |..|::||||:|.:   ||..|.|.||:|
  Rat    32 SPVSLAFNLDVDKLTVYSGPEGSYFGYSLDFYIPDARTASVLVGAPKANT---SQPDIVEGGAVY 93

  Fly    89 RC---SLTNGVCSPYVLDSRGNVDAPYSEYTFDSERKDFQWLGGSMDGGTKDTDKLLVCAPRFYA 150
            .|   :..:..|.....|:..|.....:......|.|..||.|.::   .....|::.|||.::.
  Rat    94 YCPWPAERSAQCKQIPFDTTNNRKIRVNGTKEPIEFKSNQWFGATV---RAHKGKVVACAPLYHW 155

  Fly   151 PSSRDNHLH---GVCYWVNNTVASTPQHVTRISPLRLKSEQVKEEDNGN-KASF---FYIMGELG 208
            .:.:.|...   |.||......::..:|    ||.|  :..|..|..|. :|.|   ||..|:| 
  Rat   156 RTLKPNPAKDPVGTCYVAIQNFSAYAEH----SPCR--NSNVDPEGQGYCQAGFSLDFYKNGDL- 213

  Fly   209 LSAHVADDNTKFLIGAPGINTWRGSVILYRQVDPVDNPTASRRDTSKALRRTYRDVDSNDYTPEH 273
                        ::|.||...|:|.||.....|.:.|      .:.|.:.|........|..|..
  Rat   214 ------------IVGGPGSFYWQGQVITVSVADIIAN------YSFKDILRKLAAEKQTDVAPAS 260

  Fly   274 YAPEIPTPGLWGQEEDSYFGYAVSSGFFDSSNPTKLLYVATAPQANKQSGEAYIFDVRGKSIHKY 338
            |             :|||.||:|::|.|...:..:|  ||..|:..:..|  |:..:....:...
  Rat   261 Y-------------DDSYLGYSVAAGEFTGDSLQEL--VAGIPRGAQNFG--YVSIINSTDMTFI 308

  Fly   339 HVFRGEQFGEYFGYSVLAEDLNGDGKTDVIVSAPQHALEDSHDN----GAIYVFINKGFFNFERQ 399
            ..|.|||...||||:|:..|:|.||..|::|.||.....:...|    |.:|:::......|:..
  Rat   309 QNFTGEQMASYFGYTVVVSDVNNDGMDDILVGAPLFMEREFESNPREVGQVYLYLQVSALLFQDP 373

  Fly   400 ILRSPVETMARFGTALSRLGDINHDGYNDVAVGAPFAG---NGTVFIYLGSENGLRDQPSQRLDA 461
            .:.:..||..|||::::.|||:|.|||||:|:|.||||   .|.|.||.|:..||..:|||.|. 
  Rat   374 QVLTGTETFGRFGSSVAHLGDLNQDGYNDIAIGVPFAGKDQRGKVLIYNGNARGLHSKPSQVLQ- 437

  Fly   462 PSQQPSKYGSHM----FGHGLSRGSDIDGNGFNDFAIGAPNAEAVYLYRAYPVVKVHATVKSESR 522
                 ..:||..    ||..|...:|||.|.:.|..:||.....|.:|||.|||.|.|.:.....
  Rat   438 -----GIWGSQTIPSGFGFSLRGDADIDKNDYPDLLVGAFGEGKVAVYRARPVVTVDAQLLLHPM 497

  Fly   523 EIKPEQEKVKI------TACYRL---------STTSTDKLVQEQELAIRIAMDKQLKRVKFTQTQ 572
            .|..|.:..:|      .||:.|         |.::|..|:.|.:|.. :.....:||..|....
  Rat   498 IINLENKTCQIPEFPTPVACFSLRVCASIAGQSISNTVALMAEVQLDF-LKQKGAIKRTLFLHNH 561

  Fly   573 TNEI--SFKVNANFGEQCRDF------ETQVRYSEKDIFTPIDLEMHYELTKKVPDS--EEFCET 627
            .:.:  .|.:.......|:||      ||:.|    |..:||::.::|.|    .||  |:..|.
  Rat   562 QSHLIFPFVMRQQKSLHCQDFMVYLRDETEFR----DKLSPINVSLNYSL----DDSTFEDGLEV 618

  Fly   628 CAIVDPTEPKVSTQNIIFSTGCATD-VCTADLQLRSKDVSPTYILGSADTLRLNYEITNIGETAY 691
            ..|::.....|.|:.......|..| :|..||:|.::......|:|..:.|.|.....|.||.||
  Rat   619 KPILNHYRENVVTEQAHILVDCGEDNLCVPDLRLSARPDKQEIIIGDENHLMLIINARNEGEGAY 683

  Fly   692 LPQFNVTSTSRLAFAQVPGN--------CKV----VDAVMVCDLNRGRPLAKGDTDSVTISFDVS 744
            ..:..|.......:..:..|        |:.    |..::||||  |.|:..|...|:.:.|.|.
  Rat   684 EAELFVMIPEEADYVGIERNNKGLRLLSCEYKMENVTRMVVCDL--GNPMVTGTNFSLGLRFAVP 746

  Fly   745 QLSGQSLIIHAEV-FSTGYEQNPTDNRQTNVIGLKEFTEIDASGGQTNSQIDLE-HYSNSAE--- 804
            :|...::.|:.:: ..:..:.||..|..:..|.:....:::..|.....||.|. |....||   
  Rat   747 RLEKTNMSINFDLQIRSSNKDNPDSNFVSVQINVTAVAQVEIRGVSHPPQIVLPIHNWEPAEEPH 811

  Fly   805 --------IVNNYEIKSNGPSVIEQLTVSFYIPIAYKVAGSTAIIPIINVTSLKMQASYDSQLLS 861
                    :.:.||:.:.|||.|....:....|.:.:......:..:..:..|:.|.:.:     
  Rat   812 KEEEVGPLVEHIYELHNIGPSTISDSILEVGWPFSAREEFLLYVFHLQTLGPLQCQTNPE----- 871

  Fly   862 IDLYDQNNTMLVVDPVEVTTTLSGGLERTVITQNRQSYDIHTSGHVHQTMEVLDTSMVATASMSR 926
                        ::|                      .||..:.....|.|:......||.....
  Rat   872 ------------INP----------------------QDIKPAASPEDTPELSAFLRNATIPHLV 902

  Fly   927 KRRDLKALTANREQYARISNVKAHDLLSDDFK-GKLPVNRTIVFNCRDPEMTICVRAEMRVHFRP 990
            ::||:..:..:|:..|:|.|....|.|..... |:|....:.|..         ||:.:..|   
  Rat   903 RKRDVPVVQPHRQSPAKILNCTNIDCLQISCAVGRLGGGESAVLK---------VRSRLWAH--- 955

  Fly   991 EKSINLNMRYSVDLNEVNAILVDPWEYFVILTDLKLQKKGDP----TSTSFSINR---------- 1041
                                             ..||:|.||    :..||.:.:          
  Rat   956 ---------------------------------TFLQRKNDPYALASLVSFEVKKIPYKEQPAKL 987

  Fly  1042 -----RIEPNII--SKHQETGLPIWIIIVSVIGGLLLLSAISYLLYKFGFFNRTK--KDEL-DRL 1096
                 .|:.::|  :.:....:|:|:||::::.|||:|:.::..|:|.|||:|.:  :||: ||.
  Rat   988 PAGSTAIKTSVIWATPNVSFSIPLWVIILAILLGLLVLAILTLALWKCGFFDRARPPQDEMTDRE 1052

  Fly  1097 VQQNPVEPEA 1106
            ...:...|||
  Rat  1053 QLTSDKTPEA 1062

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scbNP_523750.2 Int_alpha 51..103 CDD:214549 22/59 (37%)
FG-GAP 350..388 CDD:280083 15/41 (37%)
Int_alpha 409..459 CDD:214549 28/52 (54%)
Int_alpha 473..>515 CDD:214549 18/45 (40%)
Integrin_alpha2 507..829 CDD:285619 87/372 (23%)
Itga8NP_001167443.1 Int_alpha 53..111 CDD:214549 22/60 (37%)
Int_alpha 316..>364 CDD:214549 16/47 (34%)
Int_alpha 382..436 CDD:214549 28/53 (53%)
Int_alpha 447..491 CDD:214549 18/43 (42%)
Integrin_alpha2 482..933 CDD:285619 105/500 (21%)
Integrin_alpha 1034..1048 CDD:278771 6/13 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335728
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.740

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