DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scb and Itga3

DIOPT Version :9

Sequence 1:NP_523750.2 Gene:scb / 36692 FlyBaseID:FBgn0286785 Length:1115 Species:Drosophila melanogaster
Sequence 2:NP_001359143.1 Gene:Itga3 / 360606 RGDID:1310333 Length:1067 Species:Rattus norvegicus


Alignment Length:1207 Identity:281/1207 - (23%)
Similarity:481/1207 - (39%) Gaps:285/1207 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 LALLALISHIEAFNFMPRPSRVINSPKHLKFHINQTRSSYFGYTLVI-RQTS------IIVGAPR 70
            |||:...|...||.|......::     :|..:|.  .|.|||::.: |||.      ::.||||
  Rat    19 LALMVAASGRVAFAFNLDTKFLV-----VKEAVNP--GSLFGYSVALHRQTERQQRYLLLAGAPR 76

  Fly    71 AQSTLESQRTINETGAIYRCSLT--NGVCSPYVLDSRGNVDAPYSEYTFDSERKDFQWLGGSMDG 133
             ...::...| |.|||:|.|.||  ...|....:..:.:.|....|         ..|||.:: .
  Rat    77 -DLAVDDDYT-NRTGAVYLCPLTALKNDCERMDISEKSDPDHHIIE---------DMWLGVTV-A 129

  Fly   134 GTKDTDKLLVCAPRF----YAPSSRDNHLHGVCYWVNNTVASTP------QHVTRISPLRLKSEQ 188
            ......::||||.|:    ::.......:.|.||...|.:...|      .|             
  Rat   130 SQGPAGRVLVCAHRYTKVLWSGLEDQRRMVGKCYVRGNDLQLDPGDDWQTYH------------- 181

  Fly   189 VKEEDNGNKASFFYIMGELGLSAHVADDNTKFLIGAPGINTWRGSVILYRQVDPVDNPTASRRDT 253
             .|..|.|.......|.:||.|.....:...|  ||||...|:|:..:.::              
  Rat   182 -NEMCNSNTDYLQTGMCQLGTSGGFTQNTVYF--GAPGAYNWKGNSYMIQR-------------- 229

  Fly   254 SKALRRTYRDVDSNDYTPEHYAPEIPTPGLWGQEEDS--YFGYAVSSGFFDSS--NPTKLLYVAT 314
                    :|.|.::|:..            |.|:..  |.||.:..|   |:  :|:::..|..
  Rat   230 --------KDWDLSEYSYR------------GSEDQGNLYIGYTMQVG---SAILHPSEITLVTG 271

  Fly   315 APQANKQSGEAYIFDVRGKSIHKYHVFRGEQFGEYFGYSVLAEDLNGDGKTDVIVSAPQHALEDS 379
            ||:.........:....|..:.:..|.:|.|.|.|||.::...|||.||..|::|.||.:.....
  Rat   272 APRHQHMGAVFLLKQESGGDLQRRQVLKGTQVGAYFGSAIALADLNNDGWQDLLVGAPYYFERKE 336

  Fly   380 HDNGAIYVFINKGFFNFERQ---ILRSPVETMARFGTALSRLGDINHDGYNDVAVGAPFAGNGTV 441
            ...||:|||:|:...:|..|   :|..|  :.:.||.:::.:||||.||:.|:||||||.|.|.|
  Rat   337 EVGGAVYVFMNQAGTSFPDQPSLLLHGP--SRSAFGISVASIGDINQDGFQDIAVGAPFEGLGKV 399

  Fly   442 FIYLGSENGLRDQPSQ-----RLDAPSQQPSKYGSHMFGHGLSRGSDIDGNGFNDFAIGAPNAEA 501
            :||..|..||..||.|     .|..|       |...||:.||...|:|.|.:.|..:|: .::.
  Rat   400 YIYHSSSGGLLKQPQQIIHGETLGLP-------GLATFGYSLSGKMDVDENLYPDLLVGS-LSDH 456

  Fly   502 VYLYRAYPVVKV-HATVKSESREIKPE----QEKVKITACYRLSTTSTDKLVQEQ-ELAIRIAMD 560
            :.|.||.||:.: |.|:.:....:.|.    ...|::..|:..:.::.:...:.. .||..:..|
  Rat   457 IVLLRARPVINILHRTLVARPAVLDPSLCTVTSCVQVELCFAYNQSAGNPNYRRNITLAYTVEAD 521

  Fly   561 KQLK--RVKFTQTQTNEIS--FKVNANFGEQCRDFETQVRYSEKDIFTPIDLEMHYELTKKVPDS 621
            :..:  |::|.::|::...  |.:...   .|:..|..:..:.:|...||.:.|:|.|..::||.
  Rat   522 RDRRPPRLRFARSQSSVFHGFFSMPET---HCQTLELLLMDNVRDKLRPIVITMNYSLPLRMPDR 583

  Fly   622 EEF----CETCAIVDPTEPKVSTQNIIFSTGCATD-VCTADLQLRSKDVSP-----TYILGSADT 676
            .:.    .:...:::..:...:...:.|...|..| .|.::||:|:..||.     :.:..|.||
  Rat   584 LKLGLRSLDAYPVLNQAQAMENHTEVHFQKECGPDNKCDSNLQMRAAFVSEQLQPLSRLQYSRDT 648

  Fly   677 --LRLNYEITN------IGETAY--LPQFNVTSTSRLAFAQVPGNCKVVDAVMVCDLNRGRPLAK 731
              |.|:..:||      .||.|:  |....|:|...|:..:..|.|:..:...||:|  |.|..:
  Rat   649 KKLFLSINVTNSPSRQRAGEDAHEALLTLEVSSALLLSSVRPAGTCQANETNTVCEL--GNPFKR 711

  Fly   732 GDTDSVTISFDVS--QLSGQSLIIHAEVFSTGYEQNPTDNRQTNVIGLKEFTEIDASGGQTNSQI 794
            .....:.|:|:|:  .|..:.|..|.::.::.::    ||.|...:.|               |:
  Rat   712 NQRMELLIAFEVTGVTLHTRDLRAHLQLSTSSHQ----DNLQPMFLTL---------------QV 757

  Fly   795 DLEHYSNSAEIVNNYEIKSNGPSVIEQLTVSFYIPIAYKVAGSTAIIPIINVTS-LKMQ------ 852
            |   |:..|.:           |::.....||:   :..|.|..|:..:.:|.| ||.:      
  Rat   758 D---YTLQASL-----------SLMNHRLQSFF---SGTVMGEAAMKTVKDVGSPLKYEFQVSPV 805

  Fly   853 ----ASYDSQLLSIDL-YDQNNTMLVVDPVEVTTTLSGGLERTVITQNRQSYDIHTSGHVHQTME 912
                |:..:.:|.::. |:..|...::.|.|:|...:|            |:.....|::...:.
  Rat   806 GDGLAALGTLVLGLEWPYEVTNGKWLLYPTEITIHSNG------------SWPCQPHGNLVNPLN 858

  Fly   913 V-LDTSMVATASMSRKRRDL--------------KALTANREQYARISNVKAHDLLSDDFKGKLP 962
            : |....|...|..|:||.|              .|..|..|.....||.:|             
  Rat   859 LTLSDPGVKPLSPQRRRRQLDPGGDQGPPPVTLAAAKKAKSETVLTCSNGRA------------- 910

  Fly   963 VNRTIVFNCRDPEMT----ICVRAEMRVHFRPEKSINLNMRYSVDLNEVNAILVDPWEYFVILTD 1023
              |.:...|..|:.:    :.|:|.:           .|..:..|..:.:.:.||.|....:.|.
  Rat   911 --RCVWLECPLPDASNITNVTVKARV-----------WNSTFIEDYKDFDRVRVDGWATLFLRTS 962

  Fly  1024 LKLQKKGDPT------STSFSINRRIEPNIISKHQETGLP----IWIIIVSVIGGLLLLSAISYL 1078
            :       ||      :|.||::  |:..::.:     ||    :|:::|:|..|||||..|..|
  Rat   963 I-------PTINMENKTTWFSVD--IDSELVEE-----LPAEIELWLVLVAVGAGLLLLGLIIIL 1013

  Fly  1079 LYKFGFFNRTK------KDELDRLVQQNPVEPEAENL 1109
            |:|..||..|:      |....|:.:::...|....|
  Rat  1014 LWKCDFFKPTRYYRIMPKYHAVRIREEDRYPPPGSTL 1050

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scbNP_523750.2 Int_alpha 51..103 CDD:214549 21/60 (35%)
FG-GAP 350..388 CDD:280083 14/37 (38%)
Int_alpha 409..459 CDD:214549 26/54 (48%)
Int_alpha 473..>515 CDD:214549 14/42 (33%)
Integrin_alpha2 507..829 CDD:285619 72/353 (20%)
Itga3NP_001359143.1 Int_alpha 48..108 CDD:214549 21/63 (33%)
Int_alpha 304..352 CDD:214549 19/47 (40%)
Int_alpha 367..417 CDD:214549 26/49 (53%)
Integrin_alpha2 462..917 CDD:369878 103/522 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335732
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.840

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