DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scb and Itga11

DIOPT Version :9

Sequence 1:NP_523750.2 Gene:scb / 36692 FlyBaseID:FBgn0286785 Length:1115 Species:Drosophila melanogaster
Sequence 2:XP_038937421.1 Gene:Itga11 / 315744 RGDID:1311711 Length:1188 Species:Rattus norvegicus


Alignment Length:1371 Identity:298/1371 - (21%)
Similarity:472/1371 - (34%) Gaps:489/1371 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 EAFNFMPRPSRVINSPKHLKFHINQTRSSYFGYTLVIRQTS----IIVGAPRAQSTLESQRTINE 83
            :.||...|..|||..|.          :::||||:.....|    ::||||     ||:... .:
  Rat    21 DTFNMDTRNPRVIAGPS----------AAFFGYTVQQHDISGKKWLVVGAP-----LETNGH-QK 69

  Fly    84 TGAIYRCSLTNGVCSPYVLD--SRGNVDAPYSEYTFDSERKDFQWLGGSMDGGTKDTDKLLVCAP 146
            ||.:|:|.:|.|.|:...|.  :..||          |||||...||.|:....||: ..|.|:|
  Rat    70 TGDVYKCPVTQGNCTKLNLGRVTLSNV----------SERKDNMRLGLSLATNPKDS-SFLACSP 123

  Fly   147 RFYAPSSRDNHLHGVCYWVNN------TVA----------------------------------- 170
            .:........:..|:|..||:      |||                                   
  Rat   124 LWSHECGSSYYTTGMCSRVNSNFRFSKTVAPALQRCQTYMDIVIVLDGSNSIYPWVEVQHFLIEI 188

  Fly   171 ----------------------------------------------------------------- 170
                                                                             
  Rat   189 LTKFYIGPGQIQVGIVQYGEDAVHEFHLNDYKSVKDVVEAASHIEQRGGTETRTAFGIEFARSEA 253

  Fly   171 ---------------------------------STPQHVTR-------------ISPLRLKSEQV 189
                                             |...:|||             |:|....:| :
  Rat   254 FQKGGRKGAKKVMIVITDGESHDSPDLEKVIRQSEKDNVTRYAVAVLGYYNRRGINPETFLNE-I 317

  Fly   190 K----------------------------------EEDNGNKASFFYIMGELGLSAHVADDNTKF 220
            |                                  |..|.|:.||...|.:.|.|:||.:|..  
  Rat   318 KYIASDPDDKHFFNVTDEAALKDIVDALGDRIFSLEGTNKNETSFGLEMSQTGFSSHVVEDGV-- 380

  Fly   221 LIGAPGINTWRGSVILYRQVDPVDNPTASRRDTSKA----LRRTYRDVDSNDYTPEHYAPEIPTP 281
            |:||.|...|.|:|:               ::||..    ||             |.|..|.|  
  Rat   381 LLGAVGAYDWNGAVL---------------KETSAGKVIPLR-------------ESYLKEFP-- 415

  Fly   282 GLWGQEE----DSYFGYAVSSGFFDSSNPTKLLYVATAPQANKQSGEAYIFDV---RGKSIHKYH 339
                 ||    .:|.||.|:|..   |:....:|||.||:.| .:|:..:|.:   |..:||:  
  Rat   416 -----EELKNHAAYLGYTVTSVV---SSKQGRVYVAGAPRFN-HTGKVILFSIHTNRSLTIHQ-- 469

  Fly   340 VFRGEQFGEYFGYSVLAEDLNGDGKTDV-IVSAPQHALEDSHDNGAIYVF-INKGFFNFERQILR 402
            ..||||.|.|||..:.:.|:|.|..||| :|.||.: ..:..:.|.:||: :.:..|.|...:..
  Rat   470 ALRGEQIGSYFGSEITSVDINNDRVTDVLLVGAPMY-FSEGRERGKVYVYNLRQNRFVFNGTLKD 533

  Fly   403 SPVETMARFGTALSRLGDINHDGYNDVAVGAPF--AGNGTVFIYLGSENGLRDQPSQRLDAPSQQ 465
            |.....||||:.::.:.|:|.|.||||.||||.  :..|.::|:.|.:..:..:|.||:.|....
  Rat   534 SHSYQNARFGSCIASVQDLNQDSYNDVVVGAPLEDSHRGAIYIFHGFQTNILKKPVQRISASELA 598

  Fly   466 PSKYGSHMFGHGLSRGSDIDGNGFNDFAIGAPNAEAVYLYRAYPVVKVHATVKSESREIKPEQEK 530
            |   |...||..:....|::.:|..|.|:|| ...||.|: |.|||:::|::..|     |.:..
  Rat   599 P---GLQHFGCSIHGQLDLNEDGLVDLAVGA-LGNAVVLW-ARPVVQINASLHFE-----PSKIN 653

  Fly   531 VKITACYRLSTTST--------------------------DKLVQEQELAIRIAMDKQLKRVKFT 569
            :....|.|....:|                          :..:.|:....|..:|:...  :||
  Rat   654 IFHKDCKRNGRDATCLAAFLCFGPIFLAPHFHTATVGIRYNATMDERRYMPRAHLDEGAD--QFT 716

  Fly   570 QTQTNEISFKVNANFGEQCRDFETQVRYSEKDIFTPIDLEMHYELTKKVPDSEEFCETCAIVD-- 632
            ....      :.::..|.|:.....| ....|...|:...:.|.|  :.||..      .::|  
  Rat   717 NRAV------LLSSGQEHCQRINFHV-LDTADYVKPVAFSVEYSL--EDPDHG------PMLDNG 766

  Fly   633 -PTEPKVSTQNIIFSTGCATDV-CTADLQLRSKDVSPT------------------YILGSADTL 677
             ||..:||   :.|..||..|. |..||.|.::...||                  |.| |.||.
  Rat   767 WPTTLRVS---VPFWNGCNEDEHCVPDLVLDARSDLPTAMEYCQQVLRRPAQDCSSYTL-SFDTT 827

  Fly   678 ---------RLNYEIT--NIGETAYLPQFNVTSTSRLAFA---QVPGNCKVVDAV--------MV 720
                     |:..|.|  |.||.||....|::.:..|.||   |...:...::.|        .|
  Rat   828 VFIIESTRRRVAVEATLENRGENAYSAVLNISQSENLQFASLIQKDDSDNSIECVNEERRLHKKV 892

  Fly   721 CDLNRGRPLAKGDTDSVTISFDVSQ-LSGQSLIIHAEVFSTGYEQNPTDNRQTNVIGLKEFTEID 784
            |:::.....||... :..:.|:.|: :....|.||....|..:||:.|.:..|.::......|.|
  Rat   893 CNVSYPFFRAKAKV-AFRLDFEFSKSVFLHHLQIHLGAGSDSHEQDSTADDNTALLRFHLKYEAD 956

  Fly   785 ASGGQTNSQIDLEHYSNSAEIVNNYEIKSNGPSVIEQLTVSFYIPIAYKVAGSTAIIPIINVTSL 849
            ....:::|             ::::|:|:|  |.:|          :|...|     |..|.. .
  Rat   957 VLFTRSSS-------------LSHFEVKAN--SSLE----------SYDGIG-----PPFNCV-F 990

  Fly   850 KMQASYDSQLLSIDLYDQNNTMLVVDPVEVTTTLSGGLERTVITQNRQSYDIHTSGHV-HQTMEV 913
            |:|        ::..:..:..|:   .:.|.....|| .|.::.::..:..::||.:: ..:.|.
  Rat   991 KVQ--------NLGFFPIHGVMM---KITVPIATRGG-NRLLMLKDFFTDQVNTSCNIWGNSTEY 1043

  Fly   914 LDTSMVATASMSRKRRDLKALTANREQYARISNVKAHDLLSDDF--KGKLPVNRTIVFNCRDPEM 976
            ..|......|.:.:|..     :|.:..:.|.||:........|  .|.|.:........|..::
  Rat  1044 RSTPTEEDLSHAPQRNH-----SNSDVVSIICNVRLAPNQETSFYLVGNLWLMSLKALKYRSMKI 1103

  Fly   977 TICVRAEMRVH----FRPEKSINLNMRYSVDLNEVNAILVDPWEYFVILTDLKLQKKGDPT-STS 1036
            |:....:.:.|    ||.|                                       ||: ..:
  Rat  1104 TVNAALQRQFHSPFIFREE---------------------------------------DPSRQVT 1129

  Fly  1037 FSINRRIEPNIISKHQETGLPIWIIIVSVIGGLLLLSAISYLLYKFGFFNRTKKDELDRLVQQNP 1101
            |.         |||.::..:|||||:.|.:||||||:.:...|:|.|||...|:.....|   .|
  Rat  1130 FE---------ISKQEDWQVPIWIIVGSSLGGLLLLALLVLALWKLGFFKSAKRKREPSL---GP 1182

  Fly  1102 VEPEAE 1107
            |..|.|
  Rat  1183 VPKELE 1188

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scbNP_523750.2 Int_alpha 51..103 CDD:214549 18/55 (33%)
FG-GAP 350..388 CDD:280083 13/38 (34%)
Int_alpha 409..459 CDD:214549 20/51 (39%)
Int_alpha 473..>515 CDD:214549 15/41 (37%)
Integrin_alpha2 507..829 CDD:285619 80/392 (20%)
Itga11XP_038937421.1 Int_alpha 37..86 CDD:214549 18/64 (28%)
vWA_integrins_alpha_subunit 163..341 CDD:238746 8/178 (4%)
Int_alpha 476..523 CDD:214549 16/47 (34%)
Int_alpha 538..592 CDD:214549 20/53 (38%)
Integrin_alpha2 635..1064 CDD:400650 98/503 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335722
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23220
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.840

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