DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scb and Itgav

DIOPT Version :9

Sequence 1:NP_523750.2 Gene:scb / 36692 FlyBaseID:FBgn0286785 Length:1115 Species:Drosophila melanogaster
Sequence 2:XP_038962373.1 Gene:Itgav / 296456 RGDID:1310613 Length:1043 Species:Rattus norvegicus


Alignment Length:1151 Identity:291/1151 - (25%)
Similarity:470/1151 - (40%) Gaps:242/1151 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 SYFGYTL--VIRQTS----IIVGAPRAQSTLESQRTINETGAIYRCSLTNG-VCSPYVLDSRGNV 108
            ||||:.:  .:..||    ::||||:|.:|   |..|.|.|.:.:|..::. .|.|...||.||.
  Rat    47 SYFGFAVDFFVPSTSSRMFLLVGAPKANTT---QPGIIEGGQVLKCDCSSSRRCQPIEFDSTGNR 108

  Fly   109 DAPYSEYTFDS--ERKDFQWLGGSMDGGTKDTDKLLVCAPRFY--APSSRDNHLHGVCYWVNNTV 169
            |     |..|.  |.|..||.|.|:   ....||:|.|||.::  ....::....|.|:..:.| 
  Rat   109 D-----YAKDDPLEFKSHQWFGASV---RSKQDKILACAPLYHWRTEMKQEREPVGTCFLQDGT- 164

  Fly   170 ASTPQHVTRISPLRLKSEQVKEEDNGNKASFFYIMGELGLSAHVADDNTKFLIGAPGINTWRGSV 234
                 .....:|.|  |:.:..:..|      :..|...:....||   :.|:|.||...|:|.:
  Rat   165 -----KTVEYAPCR--SKNIDADGQG------FCQGGFSIDFTKAD---RVLLGGPGSFYWQGQL 213

  Fly   235 ILYRQVDPVDNPTASRRDTSKALRRTYRDVDSNDYTPEHYAPEIPTPGLWGQEEDSYFGYAVSSG 299
            |                  |..:.......|.|.|:.: |..::.|.......:|||.||:|:.|
  Rat   214 I------------------SDQVAEIISKYDPNVYSIK-YNNQLATRTAQAIFDDSYLGYSVAVG 259

  Fly   300 FFDSSNPTKLLYVATAPQANKQSGEAYIFDVRGKSIHKYHVFRGEQFGEYFGYSVLAEDLNGDGK 364
            .|:......  :|:..|:|.:..|..||:|  ||::...|.|.|||...|||:||.|.|:|||..
  Rat   260 DFNGDGIED--FVSGVPRAARTLGMVYIYD--GKNMSSLHNFTGEQMAAYFGFSVAATDINGDDY 320

  Fly   365 TDVIVSAPQHALEDS----HDNGAIYVFINKGFFNFERQILRSPVETMARFGTALSRLGDINHDG 425
            .||.:.||......|    .:.|.:.|.:.:...:|:...|.. .|..||||:|::.|||::.||
  Rat   321 ADVFIGAPLFMDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNG-FEVFARFGSAIAPLGDLDQDG 384

  Fly   426 YNDVAVGAPFAG---NGTVFIYLGSENGLRDQPSQRLD----APSQQPSKYGSHMFGHGLSRGSD 483
            :||:|:.||:.|   .|.|:|:.|...||...|||.|.    |.|..||      ||:.:...:|
  Rat   385 FNDIAIAAPYGGEDKKGLVYIFNGRSTGLNSVPSQILQGQWAAQSMPPS------FGYSMKGATD 443

  Fly   484 IDGNGFNDFAIGAPNAEAVYLYRAYPVVKVHA------TVKSESREIKPEQEKVKITACYR---- 538
            :|.||:.|..:||...:...||||.|||.|:|      ::.::..:|.|........:|:.    
  Rat   444 VDRNGYPDLVVGAFGVDRAVLYRARPVVTVNAGLEVYPSILNQDNKICPLPGTALKVSCFNVRFC 508

  Fly   539 LSTTSTDKLVQEQELAIRIAMDK-----QLKRVKFTQTQTNEISFKVNANFG--EQCRDFETQVR 596
            |.......|.::....:.:.:||     .::|..|...::...|..:....|  .||.:....:|
  Rat   509 LKADGKGTLPRKLNFQVELLLDKLKQKGAIRRALFLHNRSPGHSKDMTVFRGGQTQCEELVAYLR 573

  Fly   597 -YSE-KDIFTPIDLEMHYELTKKV--------PDSEEFCETCAIVDPTEPKVSTQ-NIIFSTGCA 650
             .|| :|..|||.:.|.|.|.::.        |...:|         |...||.| :|:...| .
  Rat   574 DESEFRDKLTPITIFMEYRLDQRTAADATGLQPILNQF---------TPANVSRQAHILLDCG-E 628

  Fly   651 TDVCTADLQLR-SKDVSPTYILGSADTLRLNYEITNIGETAYLPQFNVTSTSRLAFAQVPGNCKV 714
            .:||...|::. ..|....|| |..:.|.|..:..|.||.||..:..|:...:..|..|..|.:.
  Rat   629 DNVCKPKLEVSVDSDQKKIYI-GDDNPLTLTVKAQNQGEGAYEAELIVSIPPQADFIGVVRNNEA 692

  Fly   715 VDAV------------MVCDLNRGRPLAKGDTDSVTISFDVSQLS--GQSLIIHAEVFSTGYEQN 765
            :..:            :||||  |.|:..|......:.|.|.|.|  ..|:....::.|:    |
  Rat   693 LARLSCAFKTENQTRQVVCDL--GNPMKAGTQLLAGLRFSVHQQSEMDTSVKFDLKIQSS----N 751

  Fly   766 PTDNRQTNV---IGLKEFTEIDASGGQTNSQIDLE----HYSNSAE--------IVNNYEIKSNG 815
            ..||....|   :.|.....::..|..:...|.|.    .|..:.|        :.:.||:::||
  Rat   752 SFDNVSPVVSYKVDLAVLAAVEIRGVSSPDHIFLPIPNWEYKETPETEEDVGPVVQHIYELRNNG 816

  Fly   816 PSVIEQLTVSFYIPIAYKVAGSTAIIPIINVTSLKMQASYDSQLLSIDLYDQNNTMLVVDPVEVT 880
            ||...:..::...|  ||...:|.:..:.......|..:.|:::         |.:.:..|.:..
  Rat   817 PSSFSKAILNLQWP--YKYNNNTLLYILHYDIDGPMNCTADTEI---------NPLRIKTPEKND 870

  Fly   881 TTLSGGLERTVITQNRQSY---DIHTSG-HVHQTMEVLDTSMVATASMSRKRRDLKALTANREQY 941
            |....|....:||:...|.   |:||.| ...|.:::       |..:.|..|...|        
  Rat   871 TAAEQGGRNHLITKRDLSLSEGDVHTLGCGTAQCLQI-------TCQVGRLDRGKSA-------- 920

  Fly   942 ARISNVKAHDLLSDDFKGKLPVNRTIVFNCRDPEMTICVRAEMRVHFRPEKSINLNMRYSVDLNE 1006
              |..||:. |.::.|..|                                 .|.|..||:..:.
  Rat   921 --ILYVKSL-LWTETFMNK---------------------------------ENQNHSYSLKSSA 949

  Fly  1007 VNAILVDPWEYFVILTDLKLQKKGDPTSTSFSINRRIEPNIISKHQETGLPIWIIIVSVIGGLLL 1071
            ...|:..|::      :|.::...:.|..:.:|...|:|      ....:|:|:||::|:.||||
  Rat   950 SFNIIEFPYK------NLPIEDLFNSTLVTTNITWGIQP------APMPVPVWVIILAVLAGLLL 1002

  Fly  1072 LSAISYLLYKFGFFNRTK--KDELDRLVQQNPVEPEAENLNSGGNN 1115
            |:.:.:::|:.|||.|.:  ::|.:| .|..|.|      |..||:
  Rat  1003 LAVLVFVMYRMGFFKRVRPPQEEQER-EQLQPHE------NGEGNS 1041

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scbNP_523750.2 Int_alpha 51..103 CDD:214549 19/58 (33%)
FG-GAP 350..388 CDD:280083 15/41 (37%)
Int_alpha 409..459 CDD:214549 25/52 (48%)
Int_alpha 473..>515 CDD:214549 17/41 (41%)
Integrin_alpha2 507..829 CDD:285619 84/379 (22%)
ItgavXP_038962373.1 Int_alpha 46..103 CDD:214549 19/58 (33%)
WD40 repeat 126..183 CDD:293791 13/67 (19%)
WD40 repeat 188..248 CDD:293791 15/81 (19%)
VCBS 221..271 CDD:404411 13/52 (25%)
Int_alpha 248..>288 CDD:214549 15/43 (35%)
WD40 repeat 254..298 CDD:293791 14/47 (30%)
Int_alpha 302..355 CDD:214549 17/52 (33%)
WD40 repeat 307..362 CDD:293791 16/54 (30%)
Int_alpha 367..421 CDD:214549 25/53 (47%)
WD40 repeat 371..422 CDD:293791 22/50 (44%)
Int_alpha 434..476 CDD:214549 17/41 (41%)
Integrin_alpha2 467..909 CDD:400650 102/476 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335693
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.840

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