DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scb and Gpld1

DIOPT Version :9

Sequence 1:NP_523750.2 Gene:scb / 36692 FlyBaseID:FBgn0286785 Length:1115 Species:Drosophila melanogaster
Sequence 2:NP_001093982.1 Gene:Gpld1 / 291132 RGDID:631371 Length:843 Species:Rattus norvegicus


Alignment Length:428 Identity:91/428 - (21%)
Similarity:137/428 - (32%) Gaps:158/428 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   112 YSEYTFDS----ERKDFQWLGG-----------------SMDGGTKDTDKLLVCAPRFYAPSSRD 155
            ||.|:..|    |:....:|||                 .::.||.|.:  |...|.|.:...|.
  Rat   229 YSTYSTKSPFLVEQFQDYFLGGLDDMAFWSTNIYRLTSFMLENGTSDCN--LPENPLFISCDGRK 291

  Fly   156 NHLHGVCYWVNNTVASTPQHVTRISPLRLKSEQVKEEDNGNKASFFYIMGELGLSAHVADDNTKF 220
            ||                         .|.|.:|::.|.....:.|.                  
  Rat   292 NH-------------------------TLSSSKVQKNDFHRNLTMFI------------------ 313

  Fly   221 LIGAPGINTWRGSVILYRQVDPVDNPTASRRDTSKALRRTYRDVDSNDYTPEHYAPEIPTPGLWG 285
                                         .:|..|.|..|.|.|   .|:...:|||..|     
  Rat   314 -----------------------------SKDIRKNLNYTERGV---FYSTGSWAPESVT----- 341

  Fly   286 QEEDSYFGYAVSSG----FFDSSNPTKLLYVATAPQANKQSGEAYIFDVRGKSIHKYHVFRGEQF 346
                  |.|.....    .|..::.|.|.:| ::|.|:......|                    
  Rat   342 ------FMYQTLERNLRMMFTGNSQTALKHV-SSPSASYTLSVPY-------------------- 379

  Fly   347 GEYFGYSVLAEDLNGDGKTDVIVSAPQHALEDSHDNGAIYVFINKGF--------FNFERQILRS 403
             ...|:.:.:.|||.||..|::|.||.::.......|.:|:......        .:.|...:..
  Rat   380 -ARLGWVMASADLNQDGHGDLVVGAPGYSHPGRFQIGRVYIIYGNDLGLPPIDLDLDKEAHGVLE 443

  Fly   404 PVETMARFGTALSRLGDINHDGYNDVAVGAPFAG------NGTVFIYLGSENG-LRDQPSQRLDA 461
            ..:...|||:||:.| |.|.||..|:|||||..|      ||:|::|.||:.| |...|:..:..
  Rat   444 GFQPSGRFGSALAVL-DFNKDGLPDLAVGAPSVGSGQLTYNGSVYVYYGSQQGRLSSSPNITISC 507

  Fly   462 PSQQPSKYGSHMFGHGLSRGSDIDGNGFNDFAIGAPNA 499
            .....:      .|..| ..:|.||:|.:|..|.:|.|
  Rat   508 KDTYCN------LGWAL-LAADADGDGQHDLVISSPFA 538

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scbNP_523750.2 Int_alpha 51..103 CDD:214549
FG-GAP 350..388 CDD:280083 12/37 (32%)
Int_alpha 409..459 CDD:214549 26/56 (46%)
Int_alpha 473..>515 CDD:214549 10/27 (37%)
Integrin_alpha2 507..829 CDD:285619
Gpld1NP_001093982.1 Zn_dep_PLPC 28..220 CDD:395710
FG-GAP 1. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 368..429 15/81 (19%)
Int_alpha 378..435 CDD:214549 13/77 (17%)
FG-GAP 2. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 435..498 25/63 (40%)
Int_alpha 447..503 CDD:214549 26/56 (46%)
FG-GAP 3. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 500..560 11/46 (24%)
FG-GAP 515..548 CDD:396418 10/25 (40%)
FG-GAP 4. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 564..625
FG-GAP 5. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 635..695
FG-GAP 6. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 707..773
FG-GAP 7. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 791..843
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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