DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scb and Itgam

DIOPT Version :9

Sequence 1:NP_523750.2 Gene:scb / 36692 FlyBaseID:FBgn0286785 Length:1115 Species:Drosophila melanogaster
Sequence 2:XP_006230276.1 Gene:Itgam / 25021 RGDID:2926 Length:1152 Species:Rattus norvegicus


Alignment Length:1346 Identity:263/1346 - (19%)
Similarity:469/1346 - (34%) Gaps:464/1346 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LLALISHIEAFNFMPRPSRVINSPKHLKFHINQTRSSYFGYTLV-IRQTSIIVGAPRAQSTLESQ 78
            |:.:::....||        :::...:.|   |..:..||.::: :.:|.::|.||      :..
  Rat     7 LVTVLTLCHGFN--------LDTENPMTF---QENARGFGQSVIQLGETRVVVAAP------QEV 54

  Fly    79 RTINETGAIYRCSLTNGVCSP-------------------------------------------- 99
            :.:|:|||:|:|..:...|.|                                            
  Rat    55 KAVNQTGALYQCDYSTNRCDPIPLQVPPEAVNMSLGLSLAATTVPPQLLACGPTVHQNCKENTYV 119

  Fly   100 ---------------------------------YVLDSRGNVDA--------------------- 110
                                             :::|..|::::                     
  Rat   120 NGLCYLFGSNLLRKPQQFPEALRGCPQQESDIAFLIDGSGSINSIDFQKMKEFVSTVMDQFQKSK 184

  Fly   111 ------PYSE-----YTFDSERKD------------------------------FQWLGGSMDGG 134
                  .||:     :||:..:::                              ||.:.|:.|..
  Rat   185 TLFSLMQYSDEFRTHFTFNDFKRNPDPKSHVRPIRQLNGRTKTASGIRKVVRELFQKINGARDNA 249

  Fly   135 TK------DTDK----------------------LLVCAPRFYAPSSRDNHLHGVCYWVNNTVAS 171
            .|      |.:|                      ::.....|:.|.||..         .:|:||
  Rat   250 AKILVVITDGEKFGDPLNYEDVIPEAEEAGIIRYVIGVGNAFHKPQSRRE---------LDTIAS 305

  Fly   172 TP--QHVTRI----------SPLRLKSEQVKEEDNGNKASFFYIMGELGLSAHVADDNTKFLIGA 224
            .|  .||.::          :.|:.|...::....|:.:||.:.|.:.|.||.:..:..  |:|:
  Rat   306 KPAGDHVFQVDNFEALNTIRNQLQEKIFAIEGTQTGSTSSFEHEMSQEGFSAAITSNGP--LLGS 368

  Fly   225 PGINTWRGSVILYRQVDPVDNPTASRRDTSKALRRTYRDVDSNDYTPEHYAPEIPTPGLWGQEED 289
            .|...|.|...||        |:   :|.:..:..|..|.|.|                     |
  Rat   369 VGSFDWAGGAFLY--------PS---KDKATFINTTRIDSDMN---------------------D 401

  Fly   290 SYFGYAVSSGFFDSSNPTKLLYVATAPQANKQSGEAYIFDVRGKSIHKYHVFRGEQFGEYFGYSV 354
            :|.|||.:   ..|.|..:.| |..||: .:..|...:|.....:...:...:|.|.|.|||.|:
  Rat   402 AYLGYASA---VISRNRVQSL-VLGAPR-YQHIGLVVMFKQNFGAWEPHTDIKGSQIGSYFGASL 461

  Fly   355 LAEDLNGDGKTDVIVSAPQHALEDSHDNGAIYVFINKGFFNFERQILRSPVETM---------AR 410
            .:.|::.||.|::|:....|..|.:.........:.:|      |..|...|.:         .|
  Rat   462 CSVDMDADGNTNLILIGAPHHYEKTRGGQVSVCPLPRG------QRARWQCEAILHGDQGHPWGR 520

  Fly   411 FGTALSRLGDINHDGYNDVAVGAP--FAGNGTVFIYLGSENGLRDQP-SQRLDAPSQQPSKYGSH 472
            ||.||:.|||:|.|...|||:|||  ....|.|:|:.|:.......| |||:......|   |..
  Rat   521 FGAALTVLGDVNGDKLTDVAIGAPGEQENQGAVYIFHGASVASISTPHSQRIAGARFSP---GLQ 582

  Fly   473 MFGHGLSRGSDIDGNGFNDFAIGAPNAEAVYLYRAYPVVKVHATV----KSESREIKPEQEKV-- 531
            .||..||.|.|:..:|..|.|:||..  .:.|.||.||:::.||:    |:.:|.:...||:|  
  Rat   583 YFGQSLSGGKDLTMDGLMDLAVGAQG--RLLLIRAQPVLRLEATMEFSPKNLARSVFACQEEVVK 645

  Fly   532 -----KITACYRLSTTSTDKLVQ---EQELAIRIAMD--KQLKRVKFTQTQTNEISFKVNANFG- 585
                 ::..|..:...:.|:|.:   :..:...:|:|  :.:.|..|.:|: |.|..::.. || 
  Rat   646 NKDAGEVRVCLHVRKNTKDRLREGDIQSTVTYDLALDPGRSVVRAFFDETK-NGILRRIRV-FGL 708

  Fly   586 -EQCRDFETQVRYSEKDIFTPIDLEMHYELT-KKVPDSEEFCETCAIVDPTEPKVSTQNIIFSTG 648
             ::|...:..:.....:..:||.|.::|.|. :.:..|.:.....|:   ...::.|....|...
  Rat   709 TQKCETLKLILPDCVDNSVSPIILRLNYTLVGEPLRSSRDLRPVLAM---EAQRIFTAMFPFEKN 770

  Fly   649 CATD-VCTADLQLRSKDVS-PTYILGSADTLRLNYEITNIGE-------TAYLP---QFNVTSTS 701
            |..| :|..||.:....:. .|.::|.:....::..:.|.||       |.|.|   .:...|.|
  Rat   771 CGNDTICQDDLSITVSSIRVNTLVVGDSRDFDVSVTLRNDGEDSYGTKVTCYYPSGLSYRKVSAS 835

  Fly   702 RLAFAQVPGNCKVV--------DAVM---VCDLNRGRPLAKGDTD---SVTISFDVSQLSGQSLI 752
            :..|::.|  .:|:        ..|:   :.|:|  .|:...:::   :||...|.....|..|:
  Rat   836 QNQFSKKP--WRVIAEPSSSEGQGVLKSTIWDIN--HPIFPANSEVTFNVTFDVDSDASLGNKLL 896

  Fly   753 IHAEVFSTGYEQN--PTDNRQTNV-IGLKEFTEIDASGGQTNSQIDLEHYSN-------SAEIVN 807
            :...|.|   |.|  .||..::.: :.:|....:..:.|:::.:     |.|       |..|.:
  Rat   897 LKVVVTS---ENNVSRTDKTESQLELPVKYAIYMVVTSGESSIK-----YLNFTASEMTSKVIQH 953

  Fly   808 NYEIKSNGPSVIEQLTVSFYIPIAYKVAGSTAIIPIINVTSLKMQASYDSQLLSIDLYDQNNTML 872
            .|:..:.|.... .::|.|:||:                                    |.|.:.
  Rat   954 QYQFNNLGQRSF-PVSVVFWIPV------------------------------------QINKVT 981

  Fly   873 VVDPVEVTTTLSGGLERTVITQNRQSYDIHTSGHVHQTMEVLDTSMVATASMSRKRRDLKALTAN 937
            :.||.:||           .:||..|                                    ...
  Rat   982 IWDPPQVT-----------FSQNLSS------------------------------------VCR 999

  Fly   938 REQYARISNVKAHDLLSDDFKGKLPVNRTIVFNCRDPEMTICVRAEMRVHFRPEKSI-------N 995
            .||.:     .:|....|:      :.||.|.||   .:.:|.|.:..:.....|.|       |
  Rat  1000 TEQKS-----PSHSKFQDE------LERTPVLNC---SVAVCKRIQCDIPSFNSKEIFNVTLQGN 1050

  Fly   996 LNMRYSVDLNEVNAILVDPWEY------FVILTDLKLQKKGDPTSTSFSINRRIEPNIISKHQET 1054
            |...:.::.:..:.:||...|.      |.:|       .|..|........::||..:..    
  Rat  1051 LLFDWYIETSHDHLLLVSTAEILFNDSAFALL-------PGQETFVKAQTETKVEPYKVHN---- 1104

  Fly  1055 GLPIWIIIVSVIGGLLLLSAISYLLYKFGFFNRTKKDELDRLVQQN 1100
              |:.:|:.|.:|||:||:.|:..|||.|||.|..||.::....|:
  Rat  1105 --PVPLIVGSSVGGLVLLALITAGLYKLGFFKRQYKDMMNEAAPQD 1148

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scbNP_523750.2 Int_alpha 51..103 CDD:214549 14/129 (11%)
FG-GAP 350..388 CDD:280083 10/37 (27%)
Int_alpha 409..459 CDD:214549 23/52 (44%)
Int_alpha 473..>515 CDD:214549 16/41 (39%)
Integrin_alpha2 507..829 CDD:285619 75/376 (20%)
ItgamXP_006230276.1 vWA_integrins_alpha_subunit 149..324 CDD:238746 23/183 (13%)
Int_alpha 453..510 CDD:214549 16/62 (26%)
Int_alpha 517..570 CDD:214549 21/52 (40%)
Int_alpha 582..>606 CDD:214549 9/23 (39%)
Integrin_alpha2 615..1032 CDD:285619 97/531 (18%)
Integrin_alpha 1129..1141 CDD:278771 7/11 (64%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.