DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scb and Itgam

DIOPT Version :10

Sequence 1:NP_523750.2 Gene:scb / 36692 FlyBaseID:FBgn0286785 Length:1115 Species:Drosophila melanogaster
Sequence 2:NP_001076429.1 Gene:Itgam / 16409 MGIID:96607 Length:1154 Species:Mus musculus


Alignment Length:1304 Identity:260/1304 - (19%)
Similarity:447/1304 - (34%) Gaps:431/1304 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 QTRSSYFGYTLV-IRQTSIIVGAPRAQSTLESQRTINETGAIYRCSLTNGVCSP----------- 99
            |..:..||.::| :..||::|.||      :..:.:|:|||:|:|..:...|.|           
Mouse    28 QENAKGFGQSVVQLGGTSVVVAAP------QEAKAVNQTGALYQCDYSTSRCHPIPLQVPPEAVN 86

  Fly   100 ----------------------------------------------------------------- 99
                                                                             
Mouse    87 MSLGLSLAVSTVPQQLLACGPTVHQNCKENTYVNGLCYLFGSNLLRPPQQFPEALRECPQQESDI 151

  Fly   100 -YVLDSRG---NVD------------------------APYSE-----YTFDSERKD-------- 123
             :::|..|   |:|                        ..||:     :||:..:::        
Mouse   152 VFLIDGSGSINNIDFQKMKEFVSTVMEQFKKSKTLFSLMQYSDEFRIHFTFNDFKRNPSPRSHVS 216

  Fly   124 -FQWLGG-----------------SMDGGTKDTDKLLVCA--------PRFYAPSSRDNHLHGVC 162
             .:.|.|                 ..:|..::..|:||..        |..|.....:....||.
Mouse   217 PIKQLNGRTKTASGIRKVVRELFHKTNGARENAAKILVVITDGEKFGDPLDYKDVIPEADRAGVI 281

  Fly   163 YWV---------------NNTVASTP--QHVTRI---SPLRLKSEQVKEE-------DNGNKASF 200
            .:|               .:|:||.|  :||.::   ..|.....|::|:       ..|:.:||
Mouse   282 RYVIGVGNAFNKPQSRRELDTIASKPAGEHVFQVDNFEALNTIQNQLQEKIFAIEGTQTGSTSSF 346

  Fly   201 FYIMGELGLSAHVADDNTKFLIGAPGINTWRGSVILYRQVDPVDNPTASRRDTSKALRRTYRDVD 265
            .:.|.:.|.||.:..:..  |:|:.|...|.|...||...|.|.....:|.|:           |
Mouse   347 EHEMSQEGFSASITSNGP--LLGSVGSFDWAGGAFLYTSKDKVTFINTTRVDS-----------D 398

  Fly   266 SNDYTPEHYAPEIPTPGLWGQEEDSYFGYAVSSGFFDSSNPTKLLYVATAPQANKQSGEAYIFDV 330
            .|                     |:|.|||  |.....:....|  |..||: .:..|...:|..
Mouse   399 MN---------------------DAYLGYA--SAVILRNRVQSL--VLGAPR-YQHIGLVVMFRE 437

  Fly   331 RGKSIHKYHVFRGEQFGEYFGYSVLAEDLNGDGKTDVIVSAPQHALEDSHDNGAIYVFINKGFFN 395
            ...:...:...:|.|.|.|||.|:.:.|::.||.|::|:....|..|.:.........:.:|   
Mouse   438 NFGTWEPHTSIKGSQIGSYFGASLCSVDMDADGNTNLILIGAPHYYEKTRGGQVSVCPLPRG--- 499

  Fly   396 FERQILRSPVETM---------ARFGTALSRLGDINHDGYNDVAVGAP--FAGNGTVFIYLG-SE 448
               |..|...|.:         .|||.||:.|||:|.|...|||:|||  ....|.|:|:.| |.
Mouse   500 ---QRARWQCEALLHGDQGHPWGRFGAALTVLGDVNGDKLTDVAIGAPGEQENQGAVYIFYGASI 561

  Fly   449 NGLRDQPSQRLDAPSQQPSKYGSHMFGHGLSRGSDIDGNGFNDFAIGAPNAEAVYLYRAYPVVKV 513
            ..|....|||:......|   |...||..||.|.|:..:|..|.|:||..  .:.|.||.||:::
Mouse   562 ASLSASHSQRIIGAHFSP---GLQYFGQSLSGGKDLTMDGLMDLAVGAQG--HLLLLRAQPVLRL 621

  Fly   514 HATV----KSESREIKPEQEKV-------KITACYRLSTTSTDKLVQ---EQELAIRIAMDKQLK 564
            .||:    |..:|.:...||:|       ::..|.|:...:.|:|.:   :..:...:|:|....
Mouse   622 EATMEFSPKKVARSVFACQEQVLKNKDAGEVRVCLRVRKNTKDRLREGDIQSTVTYDLALDPGRS 686

  Fly   565 RVK--FTQTQTNEISFKVNANFG--EQCRDFETQVRYSEKDIFTPIDLEMHYELTKKVPDSEEFC 625
            |::  |.:|:.|  :.:....||  ::|...:..:.....|..:||.|.::|.|..:  ....|.
Mouse   687 RIRAFFDETKNN--TRRRTQVFGLMQKCETLKLILPDCVDDSVSPIILRLNYTLVGE--PLRSFG 747

  Fly   626 ETCAIVDPTEPKVSTQNIIFSTGCATD-VCTADLQLRSKDVS-PTYILGSADTLRLNYEITNIGE 688
            ....::.....:..|....|...|..| :|..||.:....:. .|.::|......::..:.|.||
Mouse   748 NLRPVLAMDAQRFFTAMFPFEKNCGNDSICQDDLSITMSAMGLDTLVVGGPQDFNMSVTLRNDGE 812

  Fly   689 TAYLPQFNVTSTSRLAF-------------------AQVPGNCKVVDAVMVCDLNRGRPLAKGDT 734
            .:|..|..|...|.|::                   |:...:.:...|:.....|...|:...::
Mouse   813 DSYGTQVTVYYPSGLSYRKDSASQNPLTKKPWFVKPAESSSSSEGHGALKSTTWNINHPIFPANS 877

  Fly   735 D-SVTISFDVSQLS--GQSLIIHAEVFSTGYEQNPTDNRQTNVIGLKEFTEIDASGGQTNSQIDL 796
            : :..::|||...:  |..|::.|.|.|   |.|.:...:|                    :..|
Mouse   878 EVTFNVTFDVDSHASFGNKLLLKAIVAS---ENNMSRTHKT--------------------KFQL 919

  Fly   797 EHYSNSAEIVNNYEIKSNGPSVIEQLTVSFYIPIAYK----VAGSTAIIPIINVTSLKMQASYDS 857
            |                              :|:.|.    |....:.|..:|.|:.:|    .|
Mouse   920 E------------------------------LPVKYAIYMIVTSDESSIRYLNFTASEM----TS 950

  Fly   858 QLLSIDLYDQNN--------TMLVVDPVEVTTTLSGGLERTVITQNRQSYDIHTSGHVHQTMEVL 914
            :::. ..|..||        :::...||::.........:.:.:||..| ..||           
Mouse   951 KVIQ-HQYQFNNLGQRSLPVSVVFWIPVQINNVTVWDHPQVIFSQNLSS-ACHT----------- 1002

  Fly   915 DTSMVATASMSRKRRDLKALTANREQYARISNVKAHDLLSDDFKGKLPVNRTIVFNCRDPEMTIC 979
                                    ||.:     ..|    .:|:.:|  .||.|.||   .:.:|
Mouse  1003 ------------------------EQKS-----PPH----SNFRDQL--ERTPVLNC---SVAVC 1029

  Fly   980 VRAEMRV-HFRPEKSINLNMR------YSVDLNEVNAILVDPWEY------FVILTDLKLQKKGD 1031
            .|.:..: .|..::..|:.::      :.:..:..:.:||...|.      |.:|       .|.
Mouse  1030 KRIQCDLPSFNTQEIFNVTLKGNLSFDWYIKTSHGHLLLVSSTEILFNDSAFALL-------PGQ 1087

  Fly  1032 PTSTSFSINRRIEPNIISKHQETGLPIWIIIVSVIGGLLLLSAISYLLYKFGFFNRTKKDELDRL 1096
            .:........::||      .|...|:.:|:.|.||||:||:.|:..|||.|||.|..||.::..
Mouse  1088 ESYVRSKTETKVEP------YEVHNPVPLIVGSSIGGLVLLALITAGLYKLGFFKRQYKDMMNEA 1146

  Fly  1097 VQQN 1100
            ..|:
Mouse  1147 APQD 1150

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scbNP_523750.2 Int_alpha 51..103 CDD:214549 16/129 (12%)
FG-GAP 350..388 CDD:460357 10/37 (27%)
Int_alpha 409..459 CDD:214549 24/52 (46%)
Int_alpha 473..>515 CDD:214549 16/41 (39%)
Integrin_alpha2 509..829 CDD:462478 63/361 (17%)
ItgamNP_001076429.1 FG-GAP 1. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 18..75 16/52 (31%)
FG-GAP 2. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 76..135 0/58 (0%)
vWA_integrins_alpha_subunit 149..324 CDD:238746 26/174 (15%)
FG-GAP 3. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 339..390 16/52 (31%)
FG-GAP 4. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 391..442 16/87 (18%)
Int_alpha 453..>495 CDD:214549 12/41 (29%)
FG-GAP 6. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 507..565 22/57 (39%)
Int_alpha 517..>558 CDD:214549 19/40 (48%)
FG-GAP 7. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 570..630 22/64 (34%)
Int_alpha 582..>620 CDD:214549 16/39 (41%)
Integrin_alpha2 616..1034 CDD:462478 93/529 (18%)
Integrin_alpha 1131..1143 CDD:459778 7/11 (64%)
GFFKR motif 1133..1137 3/3 (100%)

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