DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scb and Itgam

DIOPT Version :9

Sequence 1:NP_523750.2 Gene:scb / 36692 FlyBaseID:FBgn0286785 Length:1115 Species:Drosophila melanogaster
Sequence 2:NP_001076429.1 Gene:Itgam / 16409 MGIID:96607 Length:1154 Species:Mus musculus


Alignment Length:1304 Identity:260/1304 - (19%)
Similarity:447/1304 - (34%) Gaps:431/1304 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 QTRSSYFGYTLV-IRQTSIIVGAPRAQSTLESQRTINETGAIYRCSLTNGVCSP----------- 99
            |..:..||.::| :..||::|.||      :..:.:|:|||:|:|..:...|.|           
Mouse    28 QENAKGFGQSVVQLGGTSVVVAAP------QEAKAVNQTGALYQCDYSTSRCHPIPLQVPPEAVN 86

  Fly   100 ----------------------------------------------------------------- 99
                                                                             
Mouse    87 MSLGLSLAVSTVPQQLLACGPTVHQNCKENTYVNGLCYLFGSNLLRPPQQFPEALRECPQQESDI 151

  Fly   100 -YVLDSRG---NVD------------------------APYSE-----YTFDSERKD-------- 123
             :::|..|   |:|                        ..||:     :||:..:::        
Mouse   152 VFLIDGSGSINNIDFQKMKEFVSTVMEQFKKSKTLFSLMQYSDEFRIHFTFNDFKRNPSPRSHVS 216

  Fly   124 -FQWLGG-----------------SMDGGTKDTDKLLVCA--------PRFYAPSSRDNHLHGVC 162
             .:.|.|                 ..:|..::..|:||..        |..|.....:....||.
Mouse   217 PIKQLNGRTKTASGIRKVVRELFHKTNGARENAAKILVVITDGEKFGDPLDYKDVIPEADRAGVI 281

  Fly   163 YWV---------------NNTVASTP--QHVTRI---SPLRLKSEQVKEE-------DNGNKASF 200
            .:|               .:|:||.|  :||.::   ..|.....|::|:       ..|:.:||
Mouse   282 RYVIGVGNAFNKPQSRRELDTIASKPAGEHVFQVDNFEALNTIQNQLQEKIFAIEGTQTGSTSSF 346

  Fly   201 FYIMGELGLSAHVADDNTKFLIGAPGINTWRGSVILYRQVDPVDNPTASRRDTSKALRRTYRDVD 265
            .:.|.:.|.||.:..:..  |:|:.|...|.|...||...|.|.....:|.|:           |
Mouse   347 EHEMSQEGFSASITSNGP--LLGSVGSFDWAGGAFLYTSKDKVTFINTTRVDS-----------D 398

  Fly   266 SNDYTPEHYAPEIPTPGLWGQEEDSYFGYAVSSGFFDSSNPTKLLYVATAPQANKQSGEAYIFDV 330
            .|                     |:|.|||  |.....:....|  |..||: .:..|...:|..
Mouse   399 MN---------------------DAYLGYA--SAVILRNRVQSL--VLGAPR-YQHIGLVVMFRE 437

  Fly   331 RGKSIHKYHVFRGEQFGEYFGYSVLAEDLNGDGKTDVIVSAPQHALEDSHDNGAIYVFINKGFFN 395
            ...:...:...:|.|.|.|||.|:.:.|::.||.|::|:....|..|.:.........:.:|   
Mouse   438 NFGTWEPHTSIKGSQIGSYFGASLCSVDMDADGNTNLILIGAPHYYEKTRGGQVSVCPLPRG--- 499

  Fly   396 FERQILRSPVETM---------ARFGTALSRLGDINHDGYNDVAVGAP--FAGNGTVFIYLG-SE 448
               |..|...|.:         .|||.||:.|||:|.|...|||:|||  ....|.|:|:.| |.
Mouse   500 ---QRARWQCEALLHGDQGHPWGRFGAALTVLGDVNGDKLTDVAIGAPGEQENQGAVYIFYGASI 561

  Fly   449 NGLRDQPSQRLDAPSQQPSKYGSHMFGHGLSRGSDIDGNGFNDFAIGAPNAEAVYLYRAYPVVKV 513
            ..|....|||:......|   |...||..||.|.|:..:|..|.|:||..  .:.|.||.||:::
Mouse   562 ASLSASHSQRIIGAHFSP---GLQYFGQSLSGGKDLTMDGLMDLAVGAQG--HLLLLRAQPVLRL 621

  Fly   514 HATV----KSESREIKPEQEKV-------KITACYRLSTTSTDKLVQ---EQELAIRIAMDKQLK 564
            .||:    |..:|.:...||:|       ::..|.|:...:.|:|.:   :..:...:|:|....
Mouse   622 EATMEFSPKKVARSVFACQEQVLKNKDAGEVRVCLRVRKNTKDRLREGDIQSTVTYDLALDPGRS 686

  Fly   565 RVK--FTQTQTNEISFKVNANFG--EQCRDFETQVRYSEKDIFTPIDLEMHYELTKKVPDSEEFC 625
            |::  |.:|:.|  :.:....||  ::|...:..:.....|..:||.|.::|.|..:  ....|.
Mouse   687 RIRAFFDETKNN--TRRRTQVFGLMQKCETLKLILPDCVDDSVSPIILRLNYTLVGE--PLRSFG 747

  Fly   626 ETCAIVDPTEPKVSTQNIIFSTGCATD-VCTADLQLRSKDVS-PTYILGSADTLRLNYEITNIGE 688
            ....::.....:..|....|...|..| :|..||.:....:. .|.::|......::..:.|.||
Mouse   748 NLRPVLAMDAQRFFTAMFPFEKNCGNDSICQDDLSITMSAMGLDTLVVGGPQDFNMSVTLRNDGE 812

  Fly   689 TAYLPQFNVTSTSRLAF-------------------AQVPGNCKVVDAVMVCDLNRGRPLAKGDT 734
            .:|..|..|...|.|::                   |:...:.:...|:.....|...|:...::
Mouse   813 DSYGTQVTVYYPSGLSYRKDSASQNPLTKKPWFVKPAESSSSSEGHGALKSTTWNINHPIFPANS 877

  Fly   735 D-SVTISFDVSQLS--GQSLIIHAEVFSTGYEQNPTDNRQTNVIGLKEFTEIDASGGQTNSQIDL 796
            : :..::|||...:  |..|::.|.|.|   |.|.:...:|                    :..|
Mouse   878 EVTFNVTFDVDSHASFGNKLLLKAIVAS---ENNMSRTHKT--------------------KFQL 919

  Fly   797 EHYSNSAEIVNNYEIKSNGPSVIEQLTVSFYIPIAYK----VAGSTAIIPIINVTSLKMQASYDS 857
            |                              :|:.|.    |....:.|..:|.|:.:|    .|
Mouse   920 E------------------------------LPVKYAIYMIVTSDESSIRYLNFTASEM----TS 950

  Fly   858 QLLSIDLYDQNN--------TMLVVDPVEVTTTLSGGLERTVITQNRQSYDIHTSGHVHQTMEVL 914
            :::. ..|..||        :::...||::.........:.:.:||..| ..||           
Mouse   951 KVIQ-HQYQFNNLGQRSLPVSVVFWIPVQINNVTVWDHPQVIFSQNLSS-ACHT----------- 1002

  Fly   915 DTSMVATASMSRKRRDLKALTANREQYARISNVKAHDLLSDDFKGKLPVNRTIVFNCRDPEMTIC 979
                                    ||.:     ..|    .:|:.:|  .||.|.||   .:.:|
Mouse  1003 ------------------------EQKS-----PPH----SNFRDQL--ERTPVLNC---SVAVC 1029

  Fly   980 VRAEMRV-HFRPEKSINLNMR------YSVDLNEVNAILVDPWEY------FVILTDLKLQKKGD 1031
            .|.:..: .|..::..|:.::      :.:..:..:.:||...|.      |.:|       .|.
Mouse  1030 KRIQCDLPSFNTQEIFNVTLKGNLSFDWYIKTSHGHLLLVSSTEILFNDSAFALL-------PGQ 1087

  Fly  1032 PTSTSFSINRRIEPNIISKHQETGLPIWIIIVSVIGGLLLLSAISYLLYKFGFFNRTKKDELDRL 1096
            .:........::||      .|...|:.:|:.|.||||:||:.|:..|||.|||.|..||.::..
Mouse  1088 ESYVRSKTETKVEP------YEVHNPVPLIVGSSIGGLVLLALITAGLYKLGFFKRQYKDMMNEA 1146

  Fly  1097 VQQN 1100
            ..|:
Mouse  1147 APQD 1150

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scbNP_523750.2 Int_alpha 51..103 CDD:214549 16/129 (12%)
FG-GAP 350..388 CDD:280083 10/37 (27%)
Int_alpha 409..459 CDD:214549 24/52 (46%)
Int_alpha 473..>515 CDD:214549 16/41 (39%)
Integrin_alpha2 507..829 CDD:285619 64/363 (18%)
ItgamNP_001076429.1 FG-GAP 1. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 18..75 16/52 (31%)
FG-GAP 2. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 76..135 0/58 (0%)
vWA_integrins_alpha_subunit 149..324 CDD:238746 26/174 (15%)
FG-GAP 3. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 339..390 16/52 (31%)
FG-GAP 4. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 391..442 16/87 (18%)
Int_alpha 453..>495 CDD:214549 12/41 (29%)
FG-GAP 6. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 507..565 22/57 (39%)
Int_alpha 517..>558 CDD:214549 19/40 (48%)
FG-GAP 7. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 570..630 22/64 (34%)
Int_alpha 582..>620 CDD:214549 16/39 (41%)
Integrin_alpha2 615..1034 CDD:285619 94/530 (18%)
Integrin_alpha 1131..1143 CDD:278771 7/11 (64%)
GFFKR motif 1133..1137 3/3 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167832065
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR23220
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.840

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