DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scb and Itga3

DIOPT Version :9

Sequence 1:NP_523750.2 Gene:scb / 36692 FlyBaseID:FBgn0286785 Length:1115 Species:Drosophila melanogaster
Sequence 2:NP_001293091.1 Gene:Itga3 / 16400 MGIID:96602 Length:1068 Species:Mus musculus


Alignment Length:1230 Identity:284/1230 - (23%)
Similarity:477/1230 - (38%) Gaps:330/1230 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 PRPSRVINSPKHL--------------KFHIN-QTR----------SSYFGYTLVI-RQTS---- 63
            |.|.||..:|..|              .|..| .||          .|.|||::.: |||.    
Mouse     3 PGPCRVPRAPGWLLRALALMVAACGRVAFAFNLDTRFLVVKEAVNPGSLFGYSVALHRQTERQQR 67

  Fly    64 --IIVGAPRAQSTLESQRTINETGAIYRCSLTNGVCSPYVLDSRGNVDAPYSEYTFDSERKDF-- 124
              ::.||||..:..:..  .|.|||:|.|.||                    .:..|.||.|.  
Mouse    68 YLLLAGAPRDLAVGDDY--TNRTGAVYLCPLT--------------------AHKDDCERMDISE 110

  Fly   125 -----------QWLGGSMDGGTKDTDKLLVCAPRF----YAPSSRDNHLHGVCYWVNNTVASTP- 173
                       .|||.:: .......::||||.|:    ::.......:.|.||...|.:...| 
Mouse   111 KSDPDHHIIEDMWLGVTV-ASQGPAGRVLVCAHRYTKVLWSGLEDQRRMVGKCYVRGNDLQLDPG 174

  Fly   174 -----QHVTRISPLRLKSEQVKEEDNGNKASFFYIMGELGLSAHVADDNTKFLIGAPGINTWRGS 233
                 .|              .|..|.|.......|.:||.|.....:...|  ||||...|:|:
Mouse   175 DDWQTYH--------------NEMCNSNTDYLQTGMCQLGTSGGFTQNTVYF--GAPGAYNWKGN 223

  Fly   234 VILYRQVDPVDNPTASRRDTSKALRRTYRDVDSNDYTPEHYAPEIPTPGLWGQEEDS--YFGYAV 296
            ..:.::                      :|.|.::|:..            |.||..  |.||.|
Mouse   224 SYMIQR----------------------KDWDLSEYSYR------------GSEEQGNLYIGYTV 254

  Fly   297 SSGFFDSSN----PTKLLYVATAPQANKQSGEAYIF-DVRGKSIHKYHVFRGEQFGEYFGYSVLA 356
            ..|     |    ||.::.|.|....::..|..::. ...|..:.:..|.:|.|.|.|||.::..
Mouse   255 QVG-----NAILHPTDIITVVTGAPRHQHMGAVFLLKQESGGDLQRKQVLKGTQVGAYFGSAIAL 314

  Fly   357 EDLNGDGKTDVIVSAPQHALEDSHDNGAIYVFINKGFFNFERQ---ILRSPVETMARFGTALSRL 418
            .|||.||..|::|.||.:........||:|||:|:...:|..|   :|..|  :.:.||.:::.:
Mouse   315 ADLNNDGWQDLLVGAPYYFERKEEVGGAVYVFMNQAGASFPDQPSLLLHGP--SRSAFGISIASI 377

  Fly   419 GDINHDGYNDVAVGAPFAGNGTVFIYLGSENGLRDQPSQ-----RLDAPSQQPSKYGSHMFGHGL 478
            ||||.||:.|:||||||.|.|.|:||..|..||..||.|     :|..|       |...||:.|
Mouse   378 GDINQDGFQDIAVGAPFEGLGKVYIYHSSSGGLLRQPQQIIHGEKLGLP-------GLATFGYSL 435

  Fly   479 SRGSDIDGNGFNDFAIGAPNAEAVYLYRAYPVVKV-HATVKSESREIKP----EQEKVKITACYR 538
            |...|:|.|.:.|..:|: .::.:.|.||.||:.: |.|:.:....:.|    ....|::..|:.
Mouse   436 SGKMDVDENLYPDLLVGS-LSDHIVLLRARPVINILHRTLVARPAVLDPALCTATSCVQVELCFA 499

  Fly   539 LSTTSTDKLVQEQ-ELAIRIAMDKQLK--RVKFTQTQTNEIS--FKVNANFGEQCRDFETQVRYS 598
            .:.::.:...:.. .||..:..|:..:  |::|.::|::...  |.:...   .|:..|..:..:
Mouse   500 YNQSAGNPNYRRNITLAYTLEADRDRRPPRLRFARSQSSVFHGFFSMPET---HCQTLELLLMDN 561

  Fly   599 EKDIFTPIDLEMHYELTKKVPDSEEF----CETCAIVDPTEPKVSTQNIIFSTGCATD-VCTADL 658
            .:|...||.:.|:|.|..::||..:.    .:...:::..:...:...:.|...|..| .|.::|
Mouse   562 VRDKLRPIVIAMNYSLPLRMPDRLKLGLRSLDAYPVLNQAQAMENHTEVHFQKECGPDNKCDSNL 626

  Fly   659 QLR----SKDVSP-TYILGSADT--LRLNYEITN------IGETAY--LPQFNVTSTSRLAFAQV 708
            |:|    |:.:.| :.:..|.||  |.|:..:||      .||.|:  |....|.|...|:..:.
Mouse   627 QMRAAFLSEQLQPLSRLQYSRDTKKLFLSINVTNSPSSQRAGEDAHEALLTLEVPSALLLSSVRP 691

  Fly   709 PGNCKVVDAVMVCDLNRGRPLAKGDTDSVTISFDV--SQLSGQSLIIHAEVFSTGYEQNPTDNRQ 771
            .|.|:..:..::|:|  |.|..:.....:.|:|:|  ..|..:.|.:..::.::.::    ||.|
Mouse   692 SGTCQANNETILCEL--GNPFKRNQRMELLIAFEVIGVTLHTRDLPVLLQLSTSSHQ----DNLQ 750

  Fly   772 TNVIGLKEFTEIDASGGQTNSQIDLEHYSNSAEIVNNYEIKSNGPSVIEQLTVSFYIPIAYKVAG 836
            ..::.|               |:|   |:..|.:           |::.....||:   ...|.|
Mouse   751 PVLLTL---------------QVD---YTLQASL-----------SLMNHRLQSFF---GGTVMG 783

  Fly   837 STAIIPIINVTS-LKMQ----------ASYDSQLLSIDL-YDQNNTMLVVDPVEVTTTLSGGLER 889
            ..|:....:|.| ||.:          |:..:.:|.::. |:..|...::.|.|:|...:|    
Mouse   784 EAAMKTAEDVGSPLKYEFQVSPVGDGLAALGTLVLGLEWPYEVTNGKWLLYPTEITIHSNG---- 844

  Fly   890 TVITQNRQSYDIHTSGHVHQTMEV-LDTSMVATASMSRKRRDL--------------KALTANRE 939
                    |:....||::...:.: |....|...|..|:||.|              .|..|..|
Mouse   845 --------SWPCQPSGNLVNPLNLTLSDPGVTPLSPQRRRRQLDPGGDQSSPPVTLAAAKKAKSE 901

  Fly   940 QYARISNVKAHDLLSDDFKGKLPVNRTIVFNCRDPEMT----ICVRAEMRVHFRPEKSINLNMRY 1000
            .....||.:|               |.:...|..|:.:    :.|:|.:           .|..:
Mouse   902 TVLTCSNGRA---------------RCVWLECPLPDTSNITNVTVKARV-----------WNSTF 940

  Fly  1001 SVDLNEVNAILVDPWEYFVILTDLKLQKKGDPT------STSFSINRRIEPNIISKHQETGLP-- 1057
            ..|..:.:.:.||.|....:.|.:       ||      :|.||::  |:..::.:     ||  
Mouse   941 IEDYKDFDRVRVDGWATLFLRTSI-------PTINMENKTTWFSVD--IDSELVEE-----LPAE 991

  Fly  1058 --IWIIIVSVIGGLLLLSAISYLLYKFGFFNRTK------KDELDRLVQQNPVEPEAENL 1109
              :|:::|:|..|||||..|..||:|..||..|:      |....|:.:::...|....|
Mouse   992 IELWLVLVAVGAGLLLLGLIILLLWKCDFFKPTRYYRIMPKYHAVRIREEDRYPPPGSTL 1051

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scbNP_523750.2 Int_alpha 51..103 CDD:214549 19/58 (33%)
FG-GAP 350..388 CDD:280083 14/37 (38%)
Int_alpha 409..459 CDD:214549 26/54 (48%)
Int_alpha 473..>515 CDD:214549 14/42 (33%)
Integrin_alpha2 507..829 CDD:285619 70/353 (20%)
Itga3NP_001293091.1 FG-GAP 1. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 38..103 20/86 (23%)
Int_alpha 48..108 CDD:214549 22/81 (27%)
FG-GAP 2. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 110..171 12/61 (20%)
FG-GAP 3. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 185..235 15/73 (21%)
FG-GAP 4. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 236..293 16/73 (22%)
FG-GAP 5. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 294..355 22/60 (37%)
Int_alpha 305..353 CDD:214549 19/47 (40%)
FG-GAP 6. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 357..412 26/56 (46%)
Int_alpha 368..418 CDD:214549 26/49 (53%)
FG-GAP 7. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 416..478 20/69 (29%)
Integrin_alpha2 463..918 CDD:369878 102/522 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 865..890 6/24 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167832059
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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