DRSC/TRiP Functional Genomics Resources

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Protein Alignment scb and Itga1

DIOPT Version :10

Sequence 1:NP_523750.2 Gene:scb / 36692 FlyBaseID:FBgn0286785 Length:1115 Species:Drosophila melanogaster
Sequence 2:NP_001028400.2 Gene:Itga1 / 109700 MGIID:96599 Length:1179 Species:Mus musculus


Alignment Length:996 Identity:235/996 - (23%)
Similarity:392/996 - (39%) Gaps:252/996 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   178 RISPLRLKSEQVKEEDNGNKASFFYIMGELGLSAHVADDNTKFLIGAPGINTWRGSVILYRQVDP 242
            ||..|...::|       :.|||...|.:.|.|||.:.|  ..::||.|...|.|:|::.:    
Mouse   358 RIFALEATADQ-------SAASFEMEMSQTGFSAHYSQD--WVMLGAVGAYDWNGTVVMQK---- 409

  Fly   243 VDNPTASRRDTSKALRRTYRDVDSNDYTPEHYAPEIPTPGLWGQEEDSYFGYAVSSGFFDSSNPT 307
                                   :|.....|.......|....:...||.||.|:|    ::.|.
Mouse   410 -----------------------ANQIVIPHNTTFQTEPTKMNEPLASYLGYTVNS----ATIPG 447

  Fly   308 KLLYVATAPQANKQSGEAYIFDVRGKSIHKYHVFRGEQFGEYFGYSVLAEDLNGDGKTD-VIVSA 371
            .:||:|..|:.| .:|:..|:.:....::......|||.|.|||..:...|::.|..|| ::|.|
Mouse   448 DVLYIAGQPRYN-HTGQVVIYKMEDGDVNILQTLSGEQIGSYFGSVLTTIDIDKDSYTDLLLVGA 511

  Fly   372 PQHALEDSHDNGAIYVF-INKGFFNFERQILRSPVETM--------------------ARFGTAL 415
            |.:...:..:.|.:||: :|:  ..||.|:...|::..                    ||||||:
Mouse   512 PMYMGTEKEEQGKVYVYAVNQ--TRFEYQMSLEPIKQTCCSSLKDNSCTKENKNEPCGARFGTAV 574

  Fly   416 SRLGDINHDGYNDVAVGAPFAGN--GTVFIYLGSENGLRDQPSQRLDAPSQQPSKYGSHMFGHGL 478
            :.:.|:|.||:|||.:|||...:  |.|:||.||...:|.:.:||:  ||....| ....||..:
Mouse   575 AAVKDLNVDGFNDVVIGAPLEDDHAGAVYIYHGSGKTIRKEYAQRI--PSGGDGK-TLKFFGQSI 636

  Fly   479 SRGSDIDGNGFNDFAIGAPNAEAVYLYRAYPVVKVHATVKSESREIKPEQEKVKI---------- 533
            ....|::|:|..|..||.....|::..|...||||  |:..|..::..:::..::          
Mouse   637 HGEMDLNGDGLTDVTIGGLGGAALFWARDVAVVKV--TMNFEPNKVNIQKKNCRVEGKETVCINA 699

  Fly   534 TACYRLSTTSTDKLVQEQELAIRIAMD--KQLKRVKFTQTQTNEISFKVNANFGEQCR------- 589
            |.|:.:...|.:..|.|.:|..|:.:|  :|:.|..|:.||...|...:.....|..|       
Mouse   700 TMCFHVKLKSKEDSVYEADLQYRVTLDSLRQISRSFFSGTQERRIQRNLTVRESECIRHSFYMLD 764

  Fly   590 --DFETQVRYSEKDIFTPIDLEMHYELTKKVPDSEEFCETCAIVDPTEPKVSTQNIIFSTGCAT- 651
              ||:..||           :.:.:.||..        |...::|...|.....:|.|:..|.. 
Mouse   765 KHDFQDSVR-----------VTLDFNLTDP--------ENGPVLDDALPNSVHGHIPFAKDCGNK 810

  Fly   652 DVCTADLQLRSKDVSPT-----YILGSADTLRLNYEITNIGETAYLPQFNVTSTSRLAFAQVPGN 711
            :.|.:||.|   |||.|     .:....|...::..:.|.|::||..:..|..:..|.|:.:...
Mouse   811 ERCVSDLTL---DVSTTEKNLLIVRSQNDKFNVSLTVKNKGDSAYNTRTVVQYSPNLIFSGIEEI 872

  Fly   712 CKVVDAVMVCDLNR------GRP-LAKGDTDS--VTISFDVSQLSGQSLIIHAEVFSTGYEQNPT 767
            .|  |:   |:.|:      |.| |..||..:  :...|:.|.|| ::.|||  :.:|...:.|.
Mouse   873 QK--DS---CESNQNITCRVGYPFLRTGDVVNFKIIFQFNTSHLS-ENAIIH--LSATSDSEEPL 929

  Fly   768 DNRQTNVIGLKEFTEIDASGGQTNSQIDLEHYSNSA-----EIVNN-----------YEIKSNGP 816
            ::...|.:.:....:.:. |.|..|.....|.|.:|     |::|:           |.|:..|.
Mouse   930 ESLYDNEVNISIPVKYEV-GLQFYSSASEHHISVAANETVPELINSTKDIGDEINVFYTIRKRGH 993

  Fly   817 SVIEQLTVSFYIPIAYKVAGSTAIIPIINVTSLKMQASYDSQLLSIDLYDQNNTMLVVDPVEVTT 881
            ..:.:|.::...|               |:||......|.:...|.|..:.....| .||:.:  
Mouse   994 FPMPELRLAISFP---------------NLTSDGYPVLYPTGWSSSDNVNCRPRSL-EDPLGI-- 1040

  Fly   882 TLSGGLERTVITQNRQSYDIHTSGHVHQTMEVLDTSMVATASMSRKRRDLKALTANREQYARISN 946
              :.|.:.|:                 ...|||....:...|.                 .:|:.
Mouse  1041 --NSGKKMTI-----------------SKSEVLKRGTIQDCST-----------------CKIAT 1069

  Fly   947 VKAHDLLSDDFKGKLPVNRTIVFNCRDPEMTICVRAEMRVHFRPEKSINLNMRYSVDLNEVNAIL 1011
            :..|.|.||..:    ||.:::         :.....::.||   .|:||.:|  .:|...|:.|
Mouse  1070 ITCHLLPSDVSQ----VNVSLI---------LWKPTFIKAHF---SSLNLTIR--GELQSENSSL 1116

  Fly  1012 VDPWEYFVILTDLKLQKKGDPTSTSFSINRRIEPNI-ISKHQETG-LPIWIIIVSVIGGLLLLSA 1074
                                   |..|.||:.|..| |||....| :|:|:|::|...|||||..
Mouse  1117 -----------------------TLSSSNRKRELAIQISKDGLPGRVPLWVILLSAFAGLLLLML 1158

  Fly  1075 ISYLLYKFGFFNRTKKDELDR 1095
            :...|:|.|||.|..|.::::
Mouse  1159 LILALWKIGFFKRPLKKKMEK 1179

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scbNP_523750.2 Int_alpha 51..103 CDD:214549
FG-GAP 350..388 CDD:460357 11/38 (29%)
Int_alpha 409..459 CDD:214549 24/51 (47%)
Int_alpha 473..>515 CDD:214549 14/41 (34%)
Integrin_alpha2 509..829 CDD:462478 81/371 (22%)
Itga1NP_001028400.2 FG-GAP 1. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 30..91
FG-GAP 2. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 101..160
vWA_integrins_alpha_subunit 171..351 CDD:238746
FG-GAP 3. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 365..417 17/87 (20%)
FG-GAP 4. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 422..474 15/56 (27%)
FG-GAP 5. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 475..537 19/63 (30%)
Int_alpha 485..>528 CDD:214549 13/42 (31%)
FG-GAP 6. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 556..614 22/57 (39%)
Int_alpha 567..620 CDD:214549 24/52 (46%)
FG-GAP 7. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 618..678 21/64 (33%)
Integrin_alpha2 664..1044 CDD:462478 92/432 (21%)
GFFKR motif 1167..1171 3/3 (100%)
Blue background indicates that the domain is not in the aligned region.

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