DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scb and itgae.2

DIOPT Version :9

Sequence 1:NP_523750.2 Gene:scb / 36692 FlyBaseID:FBgn0286785 Length:1115 Species:Drosophila melanogaster
Sequence 2:XP_003200076.2 Gene:itgae.2 / 100536705 ZFINID:ZDB-GENE-130530-671 Length:1098 Species:Danio rerio


Alignment Length:1036 Identity:236/1036 - (22%)
Similarity:389/1036 - (37%) Gaps:320/1036 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   129 GSMDGGTKDTDKL----LVCAP-RFYAPSSRDNHLHGVCYWVNNTVASTPQHVTRISPLRLKSEQ 188
            |..||..|:.|.:    .:..| ::|:.||         |...|.:.|:           |:...
Zfish   319 GVGDGILKNKDAIKEMTQIADPGKYYSVSS---------YGALNDILSS-----------LERGI 363

  Fly   189 VKEEDNGNKASFFYIMGELGLSAHVA--DDNTKFLIGAPGINTWRGSVILYRQVDPVDNPTASRR 251
            :..|  |.:..|...:.|.|.|:|:.  :...:.|.||.|...|.|.|.|            ...
Zfish   364 IGTE--GTQHGFKLQLAEAGFSSHLLYNEQKVEALFGAVGAYDWSGGVFL------------KSG 414

  Fly   252 DTSKALRRTYRDVDSNDYTPEHYAPEIPTPGLWGQEEDSYFGYAVSSGFFDSSNPTKLLYVATAP 316
            :|.|.|.      ||::.|                 :..|.||:|:|...    |:|.||::.||
Zfish   415 NTVKFLN------DSHNET-----------------KFGYLGYSVTSAHL----PSKTLYISGAP 452

  Fly   317 QANKQSGEAYIFDVRGKSIHKYHVFRGEQFGEYFGYSVLAEDLNGDGKTD-VIVSAPQHALEDSH 380
            :.| .:|..:|||    .:.|| |..|:|.|.|||..:.|.|:|.|..|| ::|.||...|  :.
Zfish   453 RYN-LTGAVFIFD----GLEKY-VLHGDQVGSYFGSVLCALDINKDEHTDHLLVGAPHFHL--NG 509

  Fly   381 DNGAIYVFINKGFFNFERQILRSPVE-------TMARFGTALSRLGDINHDGYNDVAVGAPF--A 436
            :.|.:.|:    ..|.|.:..|:|||       |.||||.|:..:|||:::.:||||||||.  .
Zfish   510 EEGKVLVY----KLNQEDRFERAPVELRGDAGQTFARFGAAIGSIGDIDNNKFNDVAVGAPLETG 570

  Fly   437 GNGTVFIYLGSENGLRDQPSQRLDAPSQQPSKYGSHM--FGHGLSRG----SDIDGNGFNDFAIG 495
            ..|:|:||.|.|.|||.  ||::     .||.:|..:  ||..:|.|    |||.       .|.
Zfish   571 SAGSVYIYSGFEEGLRF--SQKI-----SPSDFGMKLVYFGQSVSVGPAPASDIP-------CIA 621

  Fly   496 APNAEAVYLYRAYPVVKVHATVKSESREIKPEQEKVKITACYRLSTTSTDKLVQEQELAIRIAMD 560
            ..:...|.::...||:.:..|:|.::..|....:..||::                ||:::|.:.
Zfish   622 VGSLGRVSVFETIPVLIIEPTIKIDTEVIALTHQMNKISS----------------ELSMKITVC 670

  Fly   561 KQLK--RVKFTQTQTNEISFKVNANFG-----------------------EQCRDFETQVRY-SE 599
            ..:|  ::|..:::|..:.::::.:.|                       |:|.:  .::.| ..
Zfish   671 FNIKKGKLKAEKSETQAVDYEIDLDSGASKKRLTCGADSLIKDTFTLTPDEECTN--KKLTYLGC 733

  Fly   600 KDIFTPIDLEMHYELTKKVPDSEEFCETCAIVDPTEPKVSTQNIIFSTGCATDVCTADLQLRSKD 664
            .|.|:||.:::.:.|.....::     ...|:|...|....:.|.|...|....|...:.|....
Zfish   734 FDCFSPIKIKLSFSLASNKNEA-----PIRILDAFTPTEVVKEIPFEKDCQAADCKPSITLSDSK 793

  Fly   665 VSPTYI-LGSADTLRLNYEITNIGETAYLPQFNVTSTSRLAFAQVPG-NCKVV-DAVMVCDLNRG 726
            :|.|.| :|....|.:|:..||.|:.:|.....:|..|.|:..::.| .|.|. |..:.|.|   
Zfish   794 ISETTITMGETQNLNINFNFTNTGDPSYKTTLTLTYPSILSERKIEGAACPVKNDNQIQCHL--- 855

  Fly   727 RPLAKGDTDSVTISFDVSQLSGQSLIIHAEVFSTGYEQNP--TDNRQTNVIGLKEFTEIDASGGQ 789
                                                 |:|  |.:.|||:.          ...|
Zfish   856 -------------------------------------QHPVFTRSAQTNLF----------ISWQ 873

  Fly   790 TNSQIDLEHYSNSAEIVNNYEIKSNGPSVIEQ----LTVSFYIPIAYKVAGSTAIIPIINVTSLK 850
            .|.:.||:    .:||:.|...::||..:::.    ..|.:::||..:.:....|:.|......|
Zfish   874 LNDKSDLK----KSEIIANLTSQNNGIQLLDSRIYTFNVMYFLPILIRGSAEPNILRIEEGGKGK 934

  Fly   851 MQASYDSQLLSIDLYDQNNTMLVVDPVEVTTTLSGGLERTVITQNRQSYDIHTSGHVHQTMEVLD 915
            .|..    ...|....:|.....:|   |..|:.....:|         |:|.: .:...:.||:
Zfish   935 TQPI----KFKIQFQGENKYGATID---VIITIKMDTSKT---------DLHIT-KIQPEVCVLE 982

  Fly   916 TSMVATASMSRK--RRDLKALTANREQYARISNVKAHDLLSDDFK----GKLPVNRTIVFNCRDP 974
            .:.|..||...|  .::|:.:|..       :||..||:.....|    |:...:.|: ::.:| 
Zfish   983 ANKVKEASYIYKCTLKELQIITIE-------ANVFIHDVQDTSEKIIVEGQYSYDETL-YSAKD- 1038

  Fly   975 EMTICVRAEMRVHFRPEKSINLNMRYSVDLNEVNAILVDPWEYFVILTDLKLQKKGDPTSTSFSI 1039
              ||             ||..|.                     |.:|.:::.....|       
Zfish  1039 --TI-------------KSFTLE---------------------VPVTKMQVMTSKGP------- 1060

  Fly  1040 NRRIEPNIISKHQETGLPIWIIIVSVIGGLLLLSAISYLLYKFGFFNRTKKDELDRLVQQN 1100
                                 ||...|||.|.|.....:|.|.|||.|..|  :|:...|:
Zfish  1061 ---------------------IIGGSIGGFLFLLIFIIILIKCGFFRRRHK--VDQTQNQD 1098

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scbNP_523750.2 Int_alpha 51..103 CDD:214549
FG-GAP 350..388 CDD:280083 13/38 (34%)
Int_alpha 409..459 CDD:214549 27/51 (53%)
Int_alpha 473..>515 CDD:214549 11/47 (23%)
Integrin_alpha2 507..829 CDD:285619 65/356 (18%)
itgae.2XP_003200076.2 vWFA 180..355 CDD:320736 11/44 (25%)
Int_alpha 429..>465 CDD:214549 16/44 (36%)
Int_alpha 477..>517 CDD:214549 15/41 (37%)
Int_alpha 540..589 CDD:214549 25/50 (50%)
Integrin_alpha2 635..>922 CDD:312071 67/363 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574899
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23220
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.940

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