DRSC/TRiP Functional Genomics Resources

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Protein Alignment scb and itga2.2

DIOPT Version :9

Sequence 1:NP_523750.2 Gene:scb / 36692 FlyBaseID:FBgn0286785 Length:1115 Species:Drosophila melanogaster
Sequence 2:XP_003199352.2 Gene:itga2.2 / 100536533 ZFINID:ZDB-GENE-091118-70 Length:1197 Species:Danio rerio


Alignment Length:1355 Identity:278/1355 - (20%)
Similarity:472/1355 - (34%) Gaps:436/1355 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 IFLALLAL-ISHIEAFNFMPRPSRVINSPKHLKFHINQTRSSYFGYTLVIRQTS------IIVGA 68
            :.||:|.. |::.:.||.....:|:.:.          :.:..||||  :||.|      ::||:
Zfish    15 VLLAVLCFSINNSQGFNVGTTGARIFSG----------SSAEQFGYT--VRQFSNSQGKWLLVGS 67

  Fly    69 PRAQSTLESQRTINETGAIYRC---------------------SLTNG----------------- 95
            |      ....|.|..|.||:|                     |::||                 
Zfish    68 P------WKGYTQNRKGEIYKCDMNKPGSVCQPLNLQNSVDVSSISNGNNINMSLGLTLTPTTKN 126

  Fly    96 ----VCSP-------------------------------------------YVLDSRGN------ 107
                .|.|                                           .|||...:      
Zfish   127 NGFMTCGPLWAQLCGSQYFYPGVCADVSPQFTLQSAFSPAVQTCGSLMDIAIVLDGSNSIYPWEP 191

  Fly   108 ---------------------------VDAPYSEYTFDSERKDFQWLGGS--------------- 130
                                       ||..:..|....:.|:......|               
Zfish   192 IVDFLVKLLENLNIGPQSTQVSVMQYGVDTTFQFYLNSYKTKESMIKAASNMQQKQGLETNTFKA 256

  Fly   131 -----------MDGGTKDTDKLLVCAPRFYAPSSRDNHLH---------------GVC---YWVN 166
                       .:||.....|::|...   ...|.|.::.               |:.   |::.
Zfish   257 IDFARTNAFLPQNGGRPGATKVMVVVT---DGESHDANIRNKVIAECDSQNITRFGIAVLGYYIR 318

  Fly   167 NTVASTPQHVTRISPLRLKSEQ-----VKEE--------------------DNGNKASFFYIMGE 206
            |.: .|.:.:..|..:..|..:     |.||                    ..|...:|...|.:
Zfish   319 NDI-DTSKLIAEIKSIASKPTEKFFFNVSEEAALIEIVGTLGDRIFNIEGVGKGTGDNFEMEMSQ 382

  Fly   207 LGLSAHVADDNTKFLIGAPGINTWRGSVILYRQVDPVDNPTASRRD--TSKALRRTYRDVDSNDY 269
            :|.||:...:....|:||.|...|.|:|:         :.||.:.|  ...|..:...|      
Zfish   383 VGFSAYQTRNKDVILLGAAGAYNWIGTVV---------HQTAQKSDILPKTAFEKVLED------ 432

  Fly   270 TPEHYAPEIPTPGLWGQEEDSYFGYAVSSGFFDSSNPTKLLYVATAPQANKQSGEAYIFDVRGKS 334
                            :...|..||:|||....||.    .|||.||:| ...|:..::.:..: 
Zfish   433 ----------------KSHCSLLGYSVSSVTDGSSE----YYVAGAPRA-VHRGQVVVYSINSQ- 475

  Fly   335 IHKYHVF----RGEQFGEYFGYSVLAEDLNGDGKTD-VIVSAPQHALEDSHDNGAIYVF-INKGF 393
              |..|.    ||:|.|.|||..:...|::.||.|| ::|.||.:..|:..:.|.:|:| |.||.
Zfish   476 --KQAVVIDSQRGDQIGSYFGSVLCPVDVDSDGVTDLLLVGAPMYMSEEKAETGRVYMFTITKGI 538

  Fly   394 FNFERQILRSPVETMARFGTALSRLGDINHDGYNDVAVGAPFAGN--GTVFIYLGSENGLRDQPS 456
            .:  .|......:..||||||::.:.|:|.||::||.||||...|  |.::||.|....::.|.|
Zfish   539 LS--NQGFLEGSQKNARFGTAIAAVPDLNLDGFSDVVVGAPMEANDQGAIYIYYGHRKSIKKQSS 601

  Fly   457 QR-----LDAPSQQPSKYGSHMFGHGLSRGSDIDGNGFNDFAIGAPNAEAVYLY-RAYPVV--KV 513
            ||     ||:..:        .||..|....|::|:...|.|:|. ..:.|.|: |...||  ||
Zfish   602 QRIVGGKLDSALK--------FFGRSLDGSGDMNGDSIPDVAVGG-FGKVVQLWSRGLAVVTAKV 657

  Fly   514 HATVKSESREIKPEQEKVKITACYR--------LSTTSTDKLVQEQELAIRIAMDKQLK--RVK- 567
            ..|....|...||.:...:..:|::        ...|::.:|:   ::...:.:|..|:  ||. 
Zfish   658 SFTPDKISILSKPCRYSGRQVSCFKAKACFSATFKPTNSIRLI---DVKYNLTLDADLQDSRVSP 719

  Fly   568 --FTQTQTNEISFKVNANFGEQCRDFETQVRYSEKDIFTPIDLEMHYELTKKVPDSEEFCETCAI 630
              :.......|...:..:..:.|.:.|..|: ...|:...|.|.:...|..  ||:.      .:
Zfish   720 RGYFSNLERVIQKGITVSAQDLCEEHEVYVQ-ETPDLVNSIALRVDVFLGN--PDAN------PV 775

  Fly   631 VDPTEPKVSTQNIIFSTGCA-TDVCTADLQL---RSKDVSPTYILGSADTLRLNYEIT--NIGET 689
            :|...|......|.||..|. .|||.:||.|   ..:.:..|.::.|.:..||::.:|  |..|.
Zfish   776 LDVFSPNAWEFFIPFSKDCGQDDVCLSDLVLTVESEEKLGKTPLVVSQNKRRLSFTVTVMNRKEN 840

  Fly   690 AYLPQFNVTSTSRLAFAQVPG-------NCKVV--DAVMVCDLNRGRPLAKGD---TDSVTISFD 742
            ||..:.:.:.:|.|.::.|..       .|..:  ..:::|.::  .|..:.|   |..|...|:
Zfish   841 AYNTRVSASYSSNLFYSSVTPLVEGTEVKCTPIKESNILMCQVS--YPALRTDQLATFVVNFDFN 903

  Fly   743 VSQLSGQSLIIHAEVFSTGYEQNPTDNRQTNVIGLKEFTEIDASGGQTNSQID---LEHYSNSAE 804
            ::|:..::. :..|..|...|:.|.||:.:..|.::..:||..|   ..|.||   ||..:|...
Zfish   904 LNQIKKEAK-VDFEALSDSTEETPADNKISISIPVQYNSEIILS---RESNIDVYLLEKDNNFLT 964

  Fly   805 IVNNYEIKSNGPSVIEQLTVSFYIPIAYKVAGSTAIIPIINVTSLKMQASYDSQLLSIDLYDQNN 869
            .|.||  |..||.....|.|            ||..:|:              .|:.:::...||
Zfish   965 TVQNY--KDIGPDFNFNLKV------------STGTVPV--------------SLVYLNISLPNN 1001

  Fly   870 TMLVVDPVEVTTTLSGGLERTVITQNRQSYD-------IHTSGHVHQTMEVLDTSMVATASMSRK 927
            |. ..:|:..|:.:.......::.::....|       .|::....::....|.....|||....
Zfish  1002 TR-AGNPLLYTSRIKTSPADKILCKDNDLIDPLKISVKPHSARFTEESFRGTDELNCRTASCRAV 1065

  Fly   928 RRDLKALTANREQYARI-SNVKAHDLLSDDFKGKLPVNRTIVFNCRDPEMTICVRAEMRVHFRPE 991
            :..||.|....:.|..: :|:.....:..||                                  
Zfish  1066 QCTLKDLDQKSDYYINVTTNIWNGTFVMADF---------------------------------- 1096

  Fly   992 KSINLNMRYSVDLNEVNAILVDPWEYFVILTDLKLQKKGDPTSTSFSINRRIEPNIISKHQETGL 1056
            ..:.|::|..::.::.:.:.::..:   :..::|:.|.|                     .:..:
Zfish  1097 LYVVLSVRADIETSQPDLLFIEQKQ---LKVEVKVSKPG---------------------AKADV 1137

  Fly  1057 PIWIIIVSVIGGLLLLSAISYLLYKFGFFNR-----TKKDELDRLVQQNPVEPEA 1106
            |:..|:.|:|||||||:....:|||.|||.|     .|.:|....||:.....||
Zfish  1138 PVGAIVGSIIGGLLLLALAVAVLYKLGFFKRKYQPLMKGEENGAEVQELQENNEA 1192

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scbNP_523750.2 Int_alpha 51..103 CDD:214549 22/142 (15%)
FG-GAP 350..388 CDD:280083 13/38 (34%)
Int_alpha 409..459 CDD:214549 25/56 (45%)
Int_alpha 473..>515 CDD:214549 15/44 (34%)
Integrin_alpha2 507..829 CDD:285619 81/357 (23%)
itga2.2XP_003199352.2 Int_alpha 47..95 CDD:214549 16/55 (29%)
vWFA 174..354 CDD:294047 23/183 (13%)
Int_alpha 437..475 CDD:214549 15/42 (36%)
Int_alpha 489..537 CDD:214549 17/47 (36%)
Int_alpha 551..604 CDD:214549 24/52 (46%)
Int_alpha 615..>637 CDD:214549 7/21 (33%)
Integrin_alpha2 647..1067 CDD:285619 97/466 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574909
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23220
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.840

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