DRSC/TRiP Functional Genomics Resources

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Protein Alignment scb and itgae.1

DIOPT Version :9

Sequence 1:NP_523750.2 Gene:scb / 36692 FlyBaseID:FBgn0286785 Length:1115 Species:Drosophila melanogaster
Sequence 2:XP_002664631.3 Gene:itgae.1 / 100333951 ZFINID:ZDB-GENE-131121-125 Length:547 Species:Danio rerio


Alignment Length:593 Identity:95/593 - (16%)
Similarity:176/593 - (29%) Gaps:205/593 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 LALLALISHIEAFNFMPRPSRVINSPKHLKFHINQTRSSYFGYTLVIRQTSIIVGAPRAQSTLES 77
            |..:.::.:...||..      |:..||.     ......||.|::..:..|.|.:|        
Zfish     5 LLFVMVLCNAAGFNIQ------ISPVKHF-----TNEDPLFGQTIIQAKDGIFVPSP-------- 50

  Fly    78 QRTINETGAIYRCSLTNGVCSPYVLDSRGNVDAPYSEYTFDSERKDFQWLGGSMDGGTKDTDKLL 142
                 ..|.:::|:|.|......:.|.......|.:                |:...|.....::
Zfish    51 -----TYGRLFKCTLDNECTKVNINDENPKGMRPVA----------------SVASLTSQEQHVV 94

  Fly   143 VCAPRFYAPSSRDNHLHGVCYWVNNTVASTPQHVTRISPLRLKSEQVKEEDNGNKASFFY----- 202
            :| .:....:....:|:|:|..|      :|....::.|..|.:.:....:|.|..:.:.     
Zfish    95 MC-NQVRTENRGTEYLNGICTLV------SPSGKVKLYPAELDNNKNNNNNNNNNNNKYQGGRIN 152

  Fly   203 ------IMGELGLSAHVADDN---TKFLIGAPGINTWR--------------------------- 231
                  |...|..|..:.||:   .|..|.....|.|:                           
Zfish   153 QGPGTEIAFVLDGSGSIQDDDFQKAKDFIYNVMSNVWKTCFDCNFAIVQYGSLIRTELSLLDNED 217

  Fly   232 --GSVILYRQVDPVDNPTASRRDTSKALRRTYRDVDSNDYTPEHYAPEIPTPGLWGQEEDSYFGY 294
              ||::..:|:..:.|.|    .|:.|:.....|:    :.||:           |.:::|....
Zfish   218 RVGSLLKVKQIKQIYNLT----KTASAINHVLTDI----FIPEN-----------GSKDNSAKII 263

  Fly   295 AVSSGFFDSSNPTKLLYVATAPQANKQSGEAYIFDVRGKSIHKYHVFRGEQF------------- 346
            .|.|......:|..|..|...||.              |.:.:|.:..|:..             
Zfish   264 IVLSDGKILGDPMTLDEVLNKPQM--------------KGVTRYSIGVGDGILKNLDATEEMMQI 314

  Fly   347 ---GEYFGYSVLAEDLNGDGKTDVIVSAPQHALEDSHDNGAIYVFINKG---------------F 393
               |:|:..|.. ..||.      |||:.:..:..:.|.|....|:..|               .
Zfish   315 ADPGKYYNVSSY-RALND------IVSSLERGIIGTKDPGTEIAFVLDGSGSIQDDDFQKAKDFI 372

  Fly   394 FNFERQILRSPVE---TMARFGTAL----------SRLGD-------------------INHDGY 426
            :|....:.::..:   .:.::|:.:          .|.|.                   ||| ..
Zfish   373 YNVMSNVWKTCFDCNFAIVQYGSLIRTELLLLDNEDRAGSLLKVKQIKQIYNLTKTASAINH-VL 436

  Fly   427 NDVAVGAPFAGNGTVFIYLGSENGLRDQPSQRLDAPSQQPSKYGSHMFGHGLSRGSDIDGNGFND 491
            .|:.:....:.|.|..|.:...:|...:....||....:|...|...:..|:       |:|.  
Zfish   437 TDIFIPEKGSKNNTAKIIIVLSDGEILEDPMTLDEVLNKPQMKGVTRYSIGV-------GDGI-- 492

  Fly   492 FAIGAPNA 499
              :..|||
Zfish   493 --LKKPNA 498

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scbNP_523750.2 Int_alpha 51..103 CDD:214549 10/51 (20%)
FG-GAP 350..388 CDD:280083 8/37 (22%)
Int_alpha 409..459 CDD:214549 11/78 (14%)
Int_alpha 473..>515 CDD:214549 6/27 (22%)
Integrin_alpha2 507..829 CDD:285619
itgae.1XP_002664631.3 vWFA 157..332 CDD:294047 36/214 (17%)
vWFA 348..523 CDD:294047 24/163 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574896
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.740

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