DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scb and itga3b

DIOPT Version :9

Sequence 1:NP_523750.2 Gene:scb / 36692 FlyBaseID:FBgn0286785 Length:1115 Species:Drosophila melanogaster
Sequence 2:NP_001177238.1 Gene:itga3b / 100331874 ZFINID:ZDB-GENE-050411-55 Length:1041 Species:Danio rerio


Alignment Length:1205 Identity:295/1205 - (24%)
Similarity:502/1205 - (41%) Gaps:279/1205 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 HIFLALLALISHIEAFNFMPRPSRVINSPKHLKFHI---NQTRSSYFGYTLVI-RQTS------I 64
            |:.:.::..|.....||.            .::|.:   .:|:.|.||:::.: :||.      :
Zfish     7 HLCVFVICAIQTNTGFNI------------DVQFPVIKEGKTKGSLFGFSVALHKQTEKAKKNLL 59

  Fly    65 IVGAP--RAQSTLESQRTINETGAIYRCSLTNGVCSPYVLDSRGNVD---APYSEYTFDSERKDF 124
            :||||  :||..| |:..||||||:|.|.:|..      ||..|::|   .|.|     ::..:.
Zfish    60 LVGAPQEKAQPQL-SKFKINETGAVYYCPITVN------LDDCGSMDLISPPKS-----TDMLEG 112

  Fly   125 QWLG----GSMDGGTKDTDKLLVCAPRFYAP---SSRDNHLHGVCYWVNNTVASTPQHVTRISPL 182
            .|||    ...:||     ::|.|..|:...   :.....:.|.||...|.::..|....:....
Zfish   113 MWLGVTVASQRNGG-----RVLACGHRYVKKLLGAEEQQRMVGKCYVRGNDLSYDPSDYWQSETY 172

  Fly   183 RLKSEQVKEEDNGNKASFFYIMGELGLSAHVADDNTKFLIGAPGINTWRGSVILYRQVDPVDNPT 247
            .|......::..|        |..:|:|..:.:.:..|  |.||..||:|:|             
Zfish   173 ELCDFNHDQDLEG--------MCNMGISGGMTEKDVYF--GTPGSFTWQGTV------------- 214

  Fly   248 ASRRDTSKALRRTYRDVDSNDYTPEHYAPEIPTPGLWGQEE-DSYFGYAVSSGFFDSSNPTKLL- 310
                      ....||.|| ||..:......   |..|::: :.|.||:|....       ||| 
Zfish   215 ----------HMKCRDTDS-DYAGDANDRSF---GKLGEDKFNIYIGYSVLEDI-------KLLD 258

  Fly   311 -----YVATAPQANKQSGEAYIFDVRGKSIHKYHVFRGEQFGEYFGYSVLAEDLNGDGKTDVIVS 370
                 .|..||: ::..|...:.|.:...:.:.....|||.|.|||..:...|||.|...|:||.
Zfish   259 RSVFTVVMGAPR-DEFKGSVILADKQDLILKQLMNITGEQIGSYFGSCLAVTDLNNDDWNDLIVG 322

  Fly   371 APQHALEDSHDNGAIYVFINKGFFNFERQ---ILRSPVETMARFGTALSRLGDINHDGYNDVAVG 432
            ||.:......:.||:|:|:|:. .:|:::   :|:.  :..:.||.|::.:||:|.||:.|:|||
Zfish   323 APFYFDRYKEEGGAVYIFMNEN-GSFQKKASLVLKG--KKGSGFGFAIAAVGDVNQDGFQDIAVG 384

  Fly   433 APFAGNGTVFIYLGSENGLRDQPSQRLDAPSQQPSKYGSHMFGHGLSRGSDIDGNGFNDFAIGAP 497
            |||..:|.|:|::||::|:..:|||.::..|..||  |...||:.||.|.|:|||.:.|..:|:.
Zfish   385 APFQDSGKVYIWMGSKSGITKEPSQVIEGKSLGPS--GFQTFGYSLSGGMDMDGNDYPDILVGSL 447

  Fly   498 NAEAVYLYRAYPVVKVHATVKSESREIKPEQ-----EKVKITACYRLSTTSTDKLVQEQELAIRI 557
            : :.:.|.|:.||:.:......|.:.:.|.|     .|||:...|.||..:::   ..:|:.::.
Zfish   448 D-DRIALLRSRPVIHLSKNFTVEPKIVIPSQCGNSCIKVKVCFSYTLSNGNSN---FRKEITVKF 508

  Fly   558 AMD----KQLKRVKF----TQTQTNEISFKVNANFGEQCRDFETQVRYSEKDIFTPIDLEMHYEL 614
            .:|    ::..||:|    ..|.|..:||..::     |::.|..|.....|...||...::..|
Zfish   509 TIDADQNRRGARVRFIDNKQSTFTGLLSFSASS-----CQELELSVNNPVTDKLQPIVFSLNVSL 568

  Fly   615 TKKVPDSEEFCETCAIVDPTEPKVSTQNII-------FSTGCATD-VCTADLQLRSKDVSPTYIL 671
            .::..:::   :|...:| :.|.:|.|.|:       |...|..| .|:::|||:::.....|..
Zfish   569 NQQKAEAQ---QTLQSLD-SFPVLSGQQILTDKAEINFHKECGDDNRCSSNLQLKARFADENYNP 629

  Fly   672 GSADTLR---------LNYEITNI------GETAYLPQFNVTSTSRLAFAQV--PG----NCKVV 715
            ..:.||.         |..|::|.      .|.|:....|::....|.::.|  |.    .|...
Zfish   630 FPSQTLEFSSNVKKLVLMVEVSNTADENKPAEDAHQATLNISIPYSLKYSGVRPPAGFDMECSAD 694

  Fly   716 DAVMVCDLNRGRPLAKGDTDSVTISFDV-----------SQLSGQSLIIHAEVFSTGYEQNPTDN 769
            :|| :|||  |.|.......|..|.|:.           |||...::...|::|......|..:.
Zfish   695 EAV-ICDL--GNPFKSNQKVSFIIIFETSGITLYTEQIQSQLQLSTISEQADLFPVLVTLNVKNT 756

  Fly   770 RQTNVIGLKEFTEIDASG---GQT--NSQIDLEHYSNSAEIVNNYEIKSNGPSVIEQLTVSFYIP 829
            ..|.....|...:...||   |::  :|..|:   .:..|.|...::.......:..|.:.|..|
Zfish   757 ILTTFSLEKLIIDTSFSGNVIGESAMSSTSDV---GSPLEFVFRVQVLGEPLGDLGTLVIDFDWP 818

  Fly   830 IAYKVAGSTAIIPIINVTSLKMQASYDSQLLSIDLYDQNNTMLVVDPVEVTTTLSGGLERTVITQ 894
              |.||....   ::.:|.:.::.|.:|.              .|.|..:...|:..|.:....:
Zfish   819 --YAVANGKW---LLYLTEIVIKGSSESH--------------CVPPGNIVNYLNLTLSKEGTKR 864

  Fly   895 NRQSYDIHTSG--HVHQTMEVLDTSMVATASMSRKRRDLKALTANREQYARISNVKAHDLLSDDF 957
            |::..|   ||  |...::.||.|..|                             ||.|   |.
Zfish   865 NKREVD---SGFPHAEASVTVLATRKV-----------------------------AHFL---DC 894

  Fly   958 KGKLPVNRTIVFNCRDPEMTICVRAEMRVHFRP---------EKSINLNMRYSVDLNEVNAILVD 1013
            ..|..:.:|  |:|  |.:.:..:||:||..|.         .|::.:.::....|.        
Zfish   895 SKKTALCQT--FSC--PLLNMSTQAEVRVRARVWNGTLLEDYAKALRVEVKGQATLR-------- 947

  Fly  1014 PWEYFVILTDLKLQKKGDPTSTSFSINRRIEPNIISKHQETGLPIWIIIVSVIGGLLLLSAISYL 1078
                  :||| |...|.|..:..||:|  |:| ::.:.....:|:|||||:.:.|:|||..||.:
Zfish   948 ------LLTD-KPAIKMDNQTREFSVN--IDP-VLGEETPYEVPLWIIIVAAVAGILLLGIISLI 1002

  Fly  1079 LYKFGFFNRTKKDELDRLVQQN---PVEP-EAENL 1109
            |:|.|||.|..:.|:.....|.   .::| |.|.|
Zfish  1003 LWKCGFFRRASRREMYEAKSQKAEIKIQPSETERL 1037

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scbNP_523750.2 Int_alpha 51..103 CDD:214549 22/60 (37%)
FG-GAP 350..388 CDD:280083 14/37 (38%)
Int_alpha 409..459 CDD:214549 24/49 (49%)
Int_alpha 473..>515 CDD:214549 15/41 (37%)
Integrin_alpha2 507..829 CDD:285619 80/379 (21%)
itga3bNP_001177238.1 Int_alpha 38..101 CDD:214549 26/69 (38%)
Int_alpha 298..346 CDD:214549 18/48 (38%)
Int_alpha 360..411 CDD:214549 24/50 (48%)
Integrin_alpha2 456..906 CDD:285619 107/523 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574935
Domainoid 1 1.000 61 1.000 Domainoid score I10420
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.740

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