DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8079 and CG4896

DIOPT Version :9

Sequence 1:NP_611023.1 Gene:CG8079 / 36689 FlyBaseID:FBgn0034002 Length:601 Species:Drosophila melanogaster
Sequence 2:NP_608583.5 Gene:CG4896 / 33305 FlyBaseID:FBgn0031319 Length:949 Species:Drosophila melanogaster


Alignment Length:587 Identity:133/587 - (22%)
Similarity:213/587 - (36%) Gaps:173/587 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 ASYKQKLLHYVSREEKVSCDKASQATE---------SELQECQYSMENDEDTNKKDQPNDLSATD 110
            |:|.|....|.:.|...:| :..|.||         |.:|..|..:...|.|        :|.|:
  Fly   485 ANYVQYYTDYYTTEISKNC-RDRQVTEANSGAAVALSAIQRKQRKVSQMETT--------VSVTE 540

  Fly   111 A-FSFVDEMRQAAK-------HAENLNNFVYEHTSGMYYDPKTGYYYNAEYGLYYDGNNGCYYSY 167
            | .:|:.....|.|       ...:::.:.|:.|||.|||..||.||:|....||:...|.|..:
  Fly   541 AKVAFLARGESAPKGNDGKKYDTPDVSKYQYDETSGYYYDHVTGLYYDAHSQYYYNNETGAYLYW 605

  Fly   168 DHAKDSYEFHSQAQVQANDAAKPESEDEDLEVQFDELGGVITDHETLKKIKAEKQKAKDQAEKSK 232
            |..:.:|...:.|..||                            .||::.|:.:|.:::|:|:|
  Fly   606 DQKRSTYVLATPASTQA----------------------------ALKEVLADAEKKEEEAKKAK 642

  Fly   233 RKAKKKK---SKKHSKKRSKKERRHKSKKRHRHSDDERSNDAEEGELSQSSDSSSDSSNEDSSSN 294
            .|.|:|:   .|....|.:||..:...|...              :|:|..|.::.::.:...|:
  Fly   643 EKEKEKEEAGGKPDKVKVAKKIVKDMEKWAK--------------QLNQKKDYTAVATPQPILSD 693

  Fly   295 TEDSSVPVFKAA-GRFQDIA-----KKYPPSLRIIVQETNVESLKVGSLHLITYKGGSLGREGAH 353
            ||.::..  :|: |.:.|:.     ||....|...|.|....::.    .|:...||....|   
  Fly   694 TEAATTS--RASQGAYADVGFSILEKKELGKLNDYVPEAGPPAIS----KLVGAYGGPSDSE--- 749

  Fly   354 DVIIPDVNVSKCHLKFKYENKLGIYQCLDLGSRNGTILNGSPMS----SDAMDLVHGSVITLGQT 414
                                        |..|.|...|..|..:    ||..|.|....:|.   
  Fly   750 ----------------------------DDNSANQKALEASVGTKRAISDESDYVDFQKLTC--- 783

  Fly   415 RLLCHVHEGNSTCGLCEPGLLIENSPPVVAAVASSTASVLSHKEQLKKLQRKYGLENEKFVDTSG 479
             |||  .....:..:.:..|.:.|                .|||.|.||:|...:|       :|
  Fly   784 -LLC--MRAFQSLDILQKHLKMSN----------------LHKENLDKLKRNPAVE-------AG 822

  Fly   480 NGQS-NYNDRAATRRVQVGSS------TDKEKTEV--------------ACVNTEIGSSNKGFKM 523
            ..:. :|.|||..||::.|.|      ..:|:.|.              |.....|.|:|.|.::
  Fly   823 TDEGLSYRDRAKERRLKYGESDPPPPNRSRERFEQEIKTLQSRQKDSFGATAAMPISSTNVGSRL 887

  Fly   524 LSKLGWQKGEKLGKTNASAGLLEPINVVANEGTSGLGNSDPVLSSSRTIDKRKLANLKITQARYQ 588
            :.|:||.:|:.|||.|  .|..|.|.........||||:...::...  |.:.... |:.:.||:
  Fly   888 MQKMGWSEGQGLGKKN--QGRTEIIEADGRSNNVGLGNNTGHMAPGN--DYKSYIK-KMMKQRYE 947

  Fly   589 RA 590
            .|
  Fly   948 NA 949

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8079NP_611023.1 OCRE_VG5Q 124..177 CDD:293883 18/52 (35%)
OCRE repeat 1 129..136 CDD:293883 1/6 (17%)
OCRE repeat 2 137..144 CDD:293883 5/6 (83%)
OCRE repeat 3 145..152 CDD:293883 4/6 (67%)
OCRE repeat 4 153..159 CDD:293883 2/5 (40%)
OCRE repeat 5 162..169 CDD:293883 2/6 (33%)
FHA 346..411 CDD:278899 10/68 (15%)
G-patch 516..560 CDD:279867 15/43 (35%)
CG4896NP_608583.5 DUF1777 91..>158 CDD:285811
RRM1_RBM5_like 211..291 CDD:241005
ZnF_RBZ 296..320 CDD:197784
RanBP2-type Zn finger 298..317 CDD:275376
RRM1_RRM2_RBM5_like 343..429 CDD:240759
OCRE_RBM5_like 562..617 CDD:293881 18/54 (33%)
OCRE repeat 1 567..574 CDD:293881 1/6 (17%)
OCRE repeat 2 575..582 CDD:293881 5/6 (83%)
OCRE repeat 3 583..590 CDD:293881 4/6 (67%)
OCRE repeat 4 591..598 CDD:293881 2/6 (33%)
OCRE repeat 5 600..607 CDD:293881 2/6 (33%)
G-patch 882..922 CDD:279867 14/41 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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