DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8079 and rbm5

DIOPT Version :10

Sequence 1:NP_611023.1 Gene:CG8079 / 36689 FlyBaseID:FBgn0034002 Length:601 Species:Drosophila melanogaster
Sequence 2:NP_001093608.3 Gene:rbm5 / 324302 ZFINID:ZDB-GENE-030131-3022 Length:835 Species:Danio rerio


Alignment Length:518 Identity:115/518 - (22%)
Similarity:179/518 - (34%) Gaps:184/518 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   106 LSATDAFSFVDEMRQAAKHAENLNNFVYEHTSGMYYDPKTGYYYNAEYGLYYDGNNGCYYSYDHA 170
            :|||...:...:..||  :..:.:::.|:.:||.||||.||.||:.....||:.....|..:|..
Zfish   462 VSATATATSTSQENQA--NVPDTSSYQYDESSGYYYDPITGLYYDPNTQYYYNSQTQQYLYWDGE 524

  Fly   171 KDSY--EFHSQAQVQANDAAKPESEDEDLEVQFDELGGVITDHETLKKIKAEKQKAKDQAEKSKR 233
            |.:|  ...|.||......:.|:.|.::.:.:              .|.|..:|.|||....:|.
Zfish   525 KQAYLPAVDSNAQNAMASTSTPQKEGKEKKEK--------------PKSKTAQQIAKDMERWAKS 575

  Fly   234 KAKKKKSKKHS-KKRSKKERRHKSKKRHRHSDDERSNDA-------EEGELSQSSDSSSDSSNED 290
            ..|:|::.|.| :..|::|||           :..:.||       :.|.|.:....:|..:.|:
Zfish   576 LNKQKENFKSSFQPISQEERR-----------EAAAADAGFTLFEKKPGALERLVTEASKMAEEE 629

  Fly   291 SSSNTEDSSVPVFKAAGRFQDIAKKYPPSLRIIVQETNVESLKVGSLHLITYKGGSLGREGAHDV 355
            |.|:                                      |||.  :..|.|.|...|    :
Zfish   630 SCSS--------------------------------------KVGL--VAAYSGDSEPEE----L 650

  Fly   356 IIPDVNVSK-----------CHLKFKYENKLGIYQCL-DLGSRNGTILNGSPMSSDAMDLVHGSV 408
            |..|....|           |..:|..:..|..:|.| ||..:|..::..|.:|           
Zfish   651 IDGDDREDKLTDWKKLACLLCRRQFPSKEALIRHQQLSDLHRQNLEVMRRSKLS----------- 704

  Fly   409 ITLGQTRLLCHVHEGNSTCGLCEPGLLIENSPPVVAAVASSTASVLSHKEQLKKLQRKYGLENEK 473
                                                            :.:|::|:||   |.| 
Zfish   705 ------------------------------------------------EAELEELERK---ETE- 717

  Fly   474 FVDTSGNGQSNYNDRAATRRVQVG---SSTDKEKTEVA---CVNTE------IGSSNKGFKMLSK 526
                     ..|.||||.||.:.|   ....|::...|   .||.|      :.|.|.|.|||..
Zfish   718 ---------MKYRDRAAERREKYGIPEPPVPKKRKYTAPTPVVNYEQPTKDGLNSDNIGNKMLQA 773

  Fly   527 LGWQKGEKLGKTNASAGLLEPINVVANEGTSGLG--NSDPVLSSSRTIDKRKLANLKITQARY 587
            :||::|:.||:.  ..|:..||........:|||  .|...|::|   |..|.|..|...||:
Zfish   774 MGWKEGKGLGRN--QQGITTPIEAQLRAKGAGLGTKGSSYNLTAS---DTYKDAVRKAMFARF 831

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8079NP_611023.1 OCRE_VG5Q 124..177 CDD:293883 17/54 (31%)
OCRE repeat 1 129..136 CDD:293883 1/6 (17%)
OCRE repeat 2 137..144 CDD:293883 5/6 (83%)
OCRE repeat 3 145..152 CDD:293883 4/6 (67%)
OCRE repeat 4 153..159 CDD:293883 2/5 (40%)
OCRE repeat 5 162..169 CDD:293883 1/6 (17%)
FHA_AGGF1 316..433 CDD:438738 20/128 (16%)
G-patch 516..560 CDD:396249 15/43 (35%)
rbm5NP_001093608.3 RRM1_RBM5 110..196 CDD:410146
zf-RanBP 198..225 CDD:395516
RanBP2-type Zn finger 202..221 CDD:275376
RRM2_RBM5 246..331 CDD:410149
OCRE_RBM5 478..533 CDD:293887 17/54 (31%)
OCRE repeat 1 483..490 CDD:293887 1/6 (17%)
OCRE repeat 2 491..498 CDD:293887 5/6 (83%)
OCRE repeat 3 499..506 CDD:293887 4/6 (67%)
OCRE repeat 4 507..514 CDD:293887 2/6 (33%)
OCRE repeat 5 516..523 CDD:293887 1/6 (17%)
G-patch 763..807 CDD:396249 17/45 (38%)
Blue background indicates that the domain is not in the aligned region.

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