DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8079 and rbm10

DIOPT Version :10

Sequence 1:NP_611023.1 Gene:CG8079 / 36689 FlyBaseID:FBgn0034002 Length:601 Species:Drosophila melanogaster
Sequence 2:XP_009294839.1 Gene:rbm10 / 101882554 ZFINID:ZDB-GENE-100922-245 Length:898 Species:Danio rerio


Alignment Length:478 Identity:94/478 - (19%)
Similarity:154/478 - (32%) Gaps:178/478 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 KQKLLHYVSREEKVSCDKASQATESELQECQYSMENDEDTNKKDQPNDLSATDAFSFVDEMRQAA 122
            :|..:..:.:.:..:|  ...||.....|||...:.|..|                         
Zfish   572 RQTSVEIIGKPQPAAC--VQPATPGTALECQQYPDPDVST------------------------- 609

  Fly   123 KHAENLNNFVYEHTSGMYYDPKTGYYYNAEYGLYYDGNNGCYYSYDHAKDSYEFHSQAQVQANDA 187
                    :.|:.:||.||||.||.||:.....|::.:...|..:|..|.:|   ..|..|:.|:
Zfish   610 --------YQYDESSGYYYDPFTGLYYDPNSQYYFNPHTQQYMYWDGEKHTY---VPAPSQSEDS 663

  Fly   188 AKPESEDEDLEVQFDELGGVITDHETLKKIKAEKQKAKDQAEKSKRKAKKKKSKKHSKKRSKKER 252
            |.            :||.|.                      .:..|.||.|.|..|.::..|:.
Zfish   664 AG------------NELSGA----------------------PNSSKDKKDKPKNKSAQQIAKDM 694

  Fly   253 RHKSKKRHRHSDDERSNDAEEGELSQS-SDSSSDSSNEDSSSNTEDSSVPVFKAAGRFQDIAKKY 316
            ...:|..:|..::.||.:.....::.| ||...:|::.|:                         
Zfish   695 ERWAKSLNRQKENGRSVNTNPRLMTHSRSDDRRESASADA------------------------- 734

  Fly   317 PPSLRIIVQETNVESLKVGSLHLITYKGGSLGREGAHDVIIPDVNVSKCHLKFKYENKLGIYQCL 381
                               ...::..||..|.|        |.:.:.    :.|:..        
Zfish   735 -------------------GYAVLEMKGALLER--------PQILME----QIKHPE-------- 760

  Fly   382 DLGSRNGTILNGSPMSSDAMDLVHGSVITLGQTRLL--CHVHEGNSTCGLCEPGLLIENSPPVVA 444
            |..|....:|.|..:.:|:.|     ..:..|.||.  |.:     .|.||.     ...|    
Zfish   761 DRESPPQALLAGCSVETDSED-----ESSEKQERLTDWCKL-----ACLLCR-----RQFP---- 806

  Fly   445 AVASSTASVLSHKEQLKKLQRKYGLENEKFVDTSGNGQS------NYNDRAATRRVQ--VGSSTD 501
                |..:::.| :||.:|.|: .||.::...|..|.|.      .|.||||.||.:  :....|
Zfish   807 ----SKEALIRH-QQLSELHRQ-NLEQKRSRTTVSNTQEGSETELKYRDRAAERREKGIIPQQPD 865

  Fly   502 KEKTEVACVNTEIGSSNKGFKML 524
            .:|..::.|      |..||:||
Zfish   866 AKKRRISPV------SAAGFQML 882

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8079NP_611023.1 OCRE_VG5Q 124..177 CDD:293883 16/52 (31%)
OCRE repeat 1 129..136 CDD:293883 1/6 (17%)
OCRE repeat 2 137..144 CDD:293883 5/6 (83%)
OCRE repeat 3 145..152 CDD:293883 4/6 (67%)
OCRE repeat 4 153..159 CDD:293883 1/5 (20%)
OCRE repeat 5 162..169 CDD:293883 1/6 (17%)
FHA_AGGF1 316..433 CDD:438738 19/118 (16%)
G-patch 516..560 CDD:396249 5/9 (56%)
rbm10XP_009294839.1 SF-CC1 108..>261 CDD:273721
RRM1_RBM10 211..294 CDD:410147
ZnF_RBZ 298..322 CDD:197784
RanBP2-type Zn finger 300..319 CDD:275375
RRM2_RBM10 375..461 CDD:410148
OCRE_RBM5_like 603..657 CDD:293881 18/89 (20%)
OCRE repeat 1 608..615 CDD:293881 2/39 (5%)
OCRE repeat 2 616..623 CDD:293881 5/6 (83%)
OCRE repeat 3 624..631 CDD:293881 4/6 (67%)
OCRE repeat 4 632..639 CDD:293881 1/6 (17%)
OCRE repeat 5 641..648 CDD:293881 1/6 (17%)
Blue background indicates that the domain is not in the aligned region.

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