DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11808 and Snu13

DIOPT Version :10

Sequence 1:NP_611021.1 Gene:CG11808 / 36687 FlyBaseID:FBgn0034000 Length:219 Species:Drosophila melanogaster
Sequence 2:NP_997680.1 Gene:Snu13 / 300092 RGDID:1303103 Length:128 Species:Rattus norvegicus


Alignment Length:21 Identity:8/21 - (38%)
Similarity:9/21 - (42%) Gaps:0/21 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   118 TPAAAPVKAIDLFDTKVQKAL 138
            |.|....||..|.|..:.|.|
  Rat     2 TEADVNPKAYPLADAHLTKKL 22

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11808NP_611021.1 None
Snu13NP_997680.1 SNU13 7..128 CDD:411046 6/16 (38%)
Interaction with U4 snRNA and U4atac snRNA. /evidence=ECO:0000250|UniProtKB:P55769 36..48
Important for U4 snRNA-binding. /evidence=ECO:0000250|UniProtKB:P55769 96..128
Blue background indicates that the domain is not in the aligned region.

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