DRSC/TRiP Functional Genomics Resources

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Protein Alignment row and pogzb

DIOPT Version :10

Sequence 1:NP_001260992.1 Gene:row / 36685 FlyBaseID:FBgn0033998 Length:1301 Species:Drosophila melanogaster
Sequence 2:NP_001333153.1 Gene:pogzb / 561483 ZFINID:ZDB-GENE-100609-3 Length:1924 Species:Danio rerio


Alignment Length:459 Identity:107/459 - (23%)
Similarity:167/459 - (36%) Gaps:99/459 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   648 KGPGRPPGSTNQTKGDRATTSSSKSLSKSLIAKGLGKKPKEKDEKIPMVIKKEEDDLRGLEELYY 712
            |.|..||.|.:.....:..:..||:              .:...::.|::          ::.||
Zfish   362 KPPATPPKSASVVPSAKVDSPPSKT--------------GDSHPRLVMLV----------DDFYY 402

  Fly   713 GISDGTDEYHEIFPYSTPRTVHNELAKTVECPICLNGDSFDSNEKLQTHLVSHISPEGKQHQF-- 775
            |..:|...|..:.....|        .:..|..|  .....:|.:|..|:..|:..:.:..:.  
Zfish   403 GTFEGNRVYVPMDNSKEP--------LSFRCLTC--SKKLKNNIRLMNHMRYHVELDQQNGEMDN 457

  Fly   776 --QCLFCLEKHPTESVLAKHNQIMHPTETKTEGSPSYYCLICQQRHNSLHLLTAHLQKVHSTLEL 838
              .|..|..:.||...|..|.:.:|   |..|.|..  |.||:....:..:...|::..|...|:
Zfish   458 HTSCQHCFRRFPTPFRLQCHLESVH---TSIESSTK--CKICEWSFENEPVFLQHMKNSHKPGEM 517

  Fly   839 PYWCHSCGYRSSSHRDLVRHFYDDHKHQNFLQCPYCLDIFYFSKLGVVNQLRIEHYFMHLDEHIN 903
            ||.|..|.||||.:.|:..||...|:....|.|.|||.:|   |.....|   :||..|      
Zfish   518 PYVCQVCEYRSSFYSDVFNHFRTWHEDTRHLLCQYCLKVF---KHSTSYQ---QHYVRH------ 570

  Fly   904 KRDPSLRCQKCSLSFLEKGDLKQHAVQHHVSMTK----------TNRPVRL-------------- 944
            ::.....|.||.|.||...|..:|.:.||.:..|          |...:|.              
Zfish   571 QKSTVYHCNKCRLQFLFTKDKVEHKINHHRTFRKPRELDGLQPGTKVTIRAYVGKKTPGQSASKA 635

  Fly   945 ---LLNNSMLIPPPKIRTHHREQPPFSTYKRPV--FFAFLE---------GK-TCAECNTDFASE 994
               :..||:........:..::.....:.|:.|  .|.||.         |: .|.||..|....
Zfish   636 STNIQKNSISSSQSTTLSGDQQSEQQQSGKKQVSKMFQFLSKFQEQRAQLGRHKCVECTFDIPDF 700

  Fly   995 ETHYTGWLHCVKCNYQTCCERAQFRHGVECN--GNFVDAMEVNMPQ--EMHCI-CGFATGNGNKM 1054
            ..||..::||..|.|.|||.||...|.:..:  |......:...|.  ::.|. |.::|.:||.|
Zfish   701 VNHYPTYVHCSLCFYSTCCSRAYANHMINNHVPGRAPKPSKKGPPSVVKLTCAGCEYSTPHGNLM 765

  Fly  1055 AQHL 1058
            |:||
Zfish   766 AKHL 769

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rowNP_001260992.1 C2H2 Zn finger 777..798 CDD:275368 6/20 (30%)
C2H2 Zn finger 812..833 CDD:275368 4/20 (20%)
C2H2 Zn finger 842..858 CDD:275368 7/15 (47%)
pogzbNP_001333153.1 SP1-4_N <25..315 CDD:425404
C2H2 Zn finger 425..458 CDD:275371 6/34 (18%)
C2H2 Zn finger 461..478 CDD:275371 5/16 (31%)
C2H2 Zn finger 491..512 CDD:275368 4/20 (20%)
C2H2 Zn finger 521..542 CDD:275368 9/20 (45%)
C2H2 Zn finger 550..570 CDD:275368 9/25 (36%)
DDE_Tnp_1_7 852..1212 CDD:433521
HTH_Tnp_Tc5 1493..1547 CDD:472278
Blue background indicates that the domain is not in the aligned region.

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