DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment row and Zfp280d

DIOPT Version :9

Sequence 1:NP_001260992.1 Gene:row / 36685 FlyBaseID:FBgn0033998 Length:1301 Species:Drosophila melanogaster
Sequence 2:NP_001101635.2 Gene:Zfp280d / 315798 RGDID:1560796 Length:969 Species:Rattus norvegicus


Alignment Length:896 Identity:185/896 - (20%)
Similarity:287/896 - (32%) Gaps:309/896 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   566 TQRLYQVATNPFKDWSILPANYKETPANAAPKRLKKPINDADYVVSNKIPKKEKDRDIASSGVKR 630
            :||....|:||.   :.||.|:.....::....:.:|.:...||.::                  
  Rat    90 SQRCPNSASNPV---AALPVNFHPESRSSDSSVIVQPFSKPGYVTNS------------------ 133

  Fly   631 GRPPNALGTPPPQL--PIKKGPG---RPPGSTNQTKGDRATTSSSKSLSKSLIAKGLGKKPKEKD 690
               |..|.:.|.:|  .:.:..|   ...|.|....|...|:..||..|.|.|:....||||..:
  Rat   134 ---PRVLSSNPSELLFDLTQDTGLSHYQGGPTLSIAGLNETSFLSKRPSGSDISSVNPKKPKPNE 195

  Fly   691 -------------EKIPMVIKKEEDDLRGLEELYYGISDGTDEYHEIFPYSTPR-TVHNELAKTV 741
                         ||.|.|:..:....:|.     ..|....:....||.:.|: .:|..|...:
  Rat   196 NISGTDASSVVSSEKSPSVMSLQVVPSQGT-----NCSSNQSKNGTTFPRACPKCNIHFNLLDPL 255

  Fly   742 E------CPICLNG-------DSFDSNEKLQT---------HLVS---------HISPEGKQH-Q 774
            :      ||..:|.       |:.:|..:.:|         .||:         .:..|.|.| .
  Rat   256 KNHMTYCCPDMINNFLGLTKTDNLNSANEAKTLDSEKGKLIMLVNDFYYGKYEGDVQEEQKTHTT 320

  Fly   775 FQCLFC-------------------LEKHPTESVLAKHNQIMH-----PT---------ETKTEG 806
            |:|..|                   |||..:|| ..||....|     ||         .|.|..
  Rat   321 FKCFSCLKVLKNNIRFMNHMKHHLELEKQSSES-WEKHTTCQHCYRQFPTPFQLQCHIESTHTPH 384

  Fly   807 SPSYYCLICQQRHNSLHLLTAHLQKVHSTLELPYWCHSCGYRSSSHRDLVRHFYDDHKHQNFLQC 871
            ..|..|.||:....:..:|..|::..|...|:||.|..|.||||...::..||...|::...|.|
  Rat   385 EFSTICKICELSFETEQILLQHMKDNHKPGEMPYICQVCNYRSSLFSEVESHFRTSHENTKNLLC 449

  Fly   872 PYCLDIFYFSKLGVVNQLRIEHYFMHLDEHINKRDPSLRCQKCSLSFLEKGDLKQHAVQHHVSMT 936
            |:||.:.   |:...   .:.||..|..:.|:      ||.||.|.||...:...|..|||.:..
  Rat   450 PFCLKVI---KIATP---YMHHYMKHQKKGIH------RCTKCRLQFLTCKEKMDHKTQHHRTFV 502

  Fly   937 KTNR--------------PVRLLLNNSMLIP------------PPKIRT----HH---REQPPFS 968
            |..:              .|..|.:.|.:.|            ||:...    :|   ....|.:
  Rat   503 KPKQLEGLPPGTKVTIRASVAPLQSGSSVTPSISASTSTLQLSPPRTENVTAKNHVKLNTSTPNT 567

  Fly   969 TYKRPVFFAFLEGKT-------------------------------------------------- 983
            |...|       .||                                                  
  Rat   568 TISDP-------SKTNEIKSNGSKSKNRSKVSNMQKKQSTLSNSNKKSKVNTALRNLRLRRGVHE 625

  Fly   984 CAECNTDFASEETHYTGWLHCVKCNYQTCCERAQFRHGVECNGNFVDAMEVNMPQEMHCI----- 1043
            |.||:::......|:..::||..|.|.|.|.:|...|        :.:...|.|.:.:||     
  Rat   626 CIECSSEVKDFANHFPTYVHCSFCRYNTSCSKAYVNH--------MMSFHSNRPSKRYCIFKKHS 682

  Fly  1044 ------------CGFATG-NG-NKMAQHLA-----NC-----GLSTCYPSLEAASENAVKRNMLD 1084
                        |.|.|. :| :.||.||:     .|     .:|.|.|:.|..||         
  Rat   683 ENLRGISLVCLNCDFLTDVSGLDNMATHLSQHETHTCQVLVEKVSVCIPTSERLSE--------- 738

  Fly  1085 MLGLVRRDGETSGEGADISETA----------DDVADQSSDMLPPQEDHHLQQHHQQVGHQQQMQ 1139
                ::.:..|.|:.:...|||          ...::...|..||.||        ..|....: 
  Rat   739 ----LKTEAPTKGQESVSKETARHSTAEREPGASHSESKQDKAPPSED--------DTGRDASV- 790

  Fly  1140 GQPNEPQAELQQEYLSAPVEHEPVQNMPVHQSMPVQQTGP-IQFGEMEAAPVLLDTQQQVQPTPD 1203
               .|..|...:|......:.|.|:.     |..|...|| :....||.......|.|:::...|
  Rat   791 ---CEAAAAANRERNVTASDTEDVRT-----SNDVLSRGPEVGTDNMEKEEQAHHTCQEMELKRD 847

  Fly  1204 YAQVSVVQQHQQQQPYGLSNYGQSSLATDIDMPLIGELSEPNAPPTPQFLG 1254
            .:..|...|.::..|      .::.|:::|...|  :|       ||:.:|
  Rat   848 QSSESTDDQSKEHSP------TEAELSSEISQDL--QL-------TPEGVG 883

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rowNP_001260992.1 C2H2 Zn finger 777..798 CDD:275368 9/39 (23%)
C2H2 Zn finger 812..833 CDD:275368 5/20 (25%)
C2H2 Zn finger 842..858 CDD:275368 6/15 (40%)
Zfp280dNP_001101635.2 DUF4195 45..229 CDD:290548 34/167 (20%)
C2H2 Zn finger 323..357 CDD:275371 7/34 (21%)
C2H2 Zn finger 360..381 CDD:275368 3/20 (15%)
C2H2 Zn finger 390..411 CDD:275368 5/20 (25%)
C2H2 Zn finger 420..439 CDD:275368 8/18 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm45293
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1818
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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