DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment row and Pogz

DIOPT Version :10

Sequence 1:NP_001260992.1 Gene:row / 36685 FlyBaseID:FBgn0033998 Length:1301 Species:Drosophila melanogaster
Sequence 2:XP_008759517.1 Gene:Pogz / 310658 RGDID:1309980 Length:1410 Species:Rattus norvegicus


Alignment Length:622 Identity:148/622 - (23%)
Similarity:223/622 - (35%) Gaps:163/622 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   616 KKEKDRDIASSGVKRGRPPNALGTPPPQLPIKKGPGRP--PGSTNQTKGDRATTSSSKSLSKSLI 678
            ||.|..|...|.....:|    .:|....|:...|...  |..:..||....:.|:..::...||
  Rat   403 KKGKSLDAEPSVPSAAKP----ASPEKTAPVTSTPSSTPIPALSPPTKVPEPSESAGDTVQTKLI 463

  Fly   679 AKGLGKKPKEKDEKIPMVIKKEEDDLRGLEELYYGISDGTDEYHEIFPYSTPRTVHNELAKTVEC 743
                            |::          ::.|||...|.......||         ::|.:..|
  Rat   464 ----------------MLV----------DDFYYGRDGGKAAQLTSFP---------KVATSFRC 493

  Fly   744 PICLNGDSFDSNEKLQTHLVSHISPEGKQHQFQ----CLFCLEKHPTESVLAKHNQIMH-PTETK 803
            |.|..  ...:|.:...|:..|:..:.:..:..    |..|..:..|...|..|.:.:| |.|:.
  Rat   494 PHCTK--RLKNNIRFMNHMKHHVELDQQNGEVDGHTICQHCYRQFSTPFQLQCHLENVHSPYEST 556

  Fly   804 TEGSPSYYCLICQQRHNSLHLLTAHLQKVHSTLELPYWCHSCGYRSSSHRDLVRHFYDDHKHQNF 868
            |:      |.||:....|..|...|::..|...|:||.|..|.||||.:.::..||...|:....
  Rat   557 TK------CKICEWAFESEPLFLQHMKDTHKPGEMPYVCQVCQYRSSLYSEVDVHFRMIHEDTRH 615

  Fly   869 LQCPYCLDIFYFSKLGVVNQLRIEHYFMHLDEHINKRDPSLRCQKCSLSFLEKGDLKQHAVQHHV 933
            |.|||||.:|   |.|...|   :||..|...::      ..|.||.|.||...|..:|.:||| 
  Rat   616 LLCPYCLKVF---KNGNAFQ---QHYMRHQKRNV------YHCNKCRLQFLFAKDKIEHKLQHH- 667

  Fly   934 SMTKTNRPVRLLLNNSMLIPPPKIRTH-HREQP---PFSTYKR-----------------PVF-- 975
               ||.|..:.|   ..|.|..|:... .|.||   |.|:...                 |||  
  Rat   668 ---KTFRKPKQL---EGLKPGTKVTIRASRGQPRTVPVSSNDAPSGALQEAAPLTSADPLPVFLY 726

  Fly   976 --------------FAFLEGKTCAECNTDFASEETHYTGWLHCVKCNYQTCCERAQFRHGVECN- 1025
                          .:.:..:||.||:.:......|:..::||..|.|.|||.||...|.:..: 
  Rat   727 PPVQRNVQKRAVRKMSVMGRQTCLECSFEIPDFPNHFPTYVHCSLCRYSTCCSRAYANHMINNHV 791

  Fly  1026 -----------GNFVDAMEVNMPQEMHCI-CGFATGNGNKMAQHL--------ANC---GLS-TC 1066
                       .|||..:      ::.|. |.|||..|:.||:||        :|.   ||| ..
  Rat   792 PRKSPKYLALFKNFVSGI------KLACTSCTFATSVGDAMAKHLVFNPSHRSSNILPRGLSWMS 850

  Fly  1067 YPSLEAASENAVKRNML----------DMLGLVRRDGETSGEGADIS-ETADDVADQSSDMLPPQ 1120
            |..|....|..:.|:|.          :....|:..|.||.|..::: .....:...:|...||.
  Rat   851 YSRLGQTPERVLDRSMKNTYLPPPLLPNKAATVKPVGATSAEPQELAGPVLQALPSPASTATPPA 915

  Fly  1121 EDHHLQ---------QHHQQVGHQQQMQGQP--NEPQ 1146
            ...|.|         :..:.:...:|.:|.|  .||:
  Rat   916 TPTHPQPSALPPLATEGTECLNVNEQEEGSPVTQEPE 952

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rowNP_001260992.1 C2H2 Zn finger 777..798 CDD:275368 5/20 (25%)
C2H2 Zn finger 812..833 CDD:275368 6/20 (30%)
C2H2 Zn finger 842..858 CDD:275368 6/15 (40%)
PogzXP_008759517.1 PHA03247 264..>458 CDD:223021 13/58 (22%)
C2H2 Zn finger 493..526 CDD:275371 6/34 (18%)
C2H2 Zn finger 529..550 CDD:275368 5/20 (25%)
C2H2 Zn finger 559..580 CDD:275368 6/20 (30%)
C2H2 Zn finger 589..610 CDD:275368 8/20 (40%)
C2H2 Zn finger 618..638 CDD:275368 11/25 (44%)
CENPB 1018..1079 CDD:197828
DDE_3 1159..>1270 CDD:481203
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.