DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment row and Zfp280b

DIOPT Version :9

Sequence 1:NP_001260992.1 Gene:row / 36685 FlyBaseID:FBgn0033998 Length:1301 Species:Drosophila melanogaster
Sequence 2:NP_001099854.1 Gene:Zfp280b / 294343 RGDID:1565460 Length:532 Species:Rattus norvegicus


Alignment Length:549 Identity:120/549 - (21%)
Similarity:178/549 - (32%) Gaps:159/549 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   545 AFNNIIIHIAEQTRV-----TTNETITQRLYQVATNPFKDWS----ILPANYKETPANAAPKRLK 600
            |.:||:..:...:|:     ...||.||||.  .:.|....|    :||.:..|:.:..:| .:.
  Rat    63 ANSNILNRVTPGSRLKRKHDRLRETTTQRLQ--PSPPAAPTSEAAIVLPVSPAESRSTDSP-III 124

  Fly   601 KPINDADYVVSNKIPKKEKDRDIASSGVKRGRPPNALGTPPPQLPIKKGPGR------------- 652
            :|::::||        |...:.:.||..|...|...|.:.      :.||.|             
  Rat   125 EPLSESDY--------KSNSQVVPSSSSKCCSPLATLSSS------ESGPARAACSGGGLNESLY 175

  Fly   653 ----------------------------PPGSTNQTKGDRATTSSSKSLSKSLIAKGLGKKPKEK 689
                                        |.|..:.:...:.|.|.....|.:|...|   .|...
  Rat   176 VSKCHFSINPQRPERSIEIVEELSSALPPSGPFHTSNAQQRTPSLEAPKSLNLFVNG---APLSG 237

  Fly   690 DEKIP-------------MVIKKEEDDLRG-----LEELYYGISDGTDEYHEIFPYSTPRTVHNE 736
            |...|             :...:..|..:|     |.:.|||...|..:     |.....|    
  Rat   238 DPVHPRQDSGSVDTDFSSLASPETFDPKKGSLTLLLSDFYYGQYKGEGK-----PEQKTHT---- 293

  Fly   737 LAKTVECPICLNGDSFDSNEKLQTHLVSHI------SPEGKQHQFQCLFCLEKHPTESVLAKHNQ 795
               |.:||.|   .....|.|...|...|:      |.|..:....||.|.....:...|..|..
  Rat   294 ---TFKCPSC---SKALKNVKFMNHTKHHLELERQGSDEAWESHTTCLRCHRLFASPFQLECHID 352

  Fly   796 IMHPTETKTEGSPSYYCLICQQRHNSLHLLTAHLQKVHSTLELPYWCHSCGYRSSSHRDLVRHFY 860
            .:|     |...|...|.||:....:..:|..|::..|...|:||.|..|.||||...|:..||.
  Rat   353 RVH-----TAPDPCVVCKICELSFETEQVLLEHMKDNHKPGEMPYVCQVCKYRSSVFADVETHFT 412

  Fly   861 DDHKHQNFLQCPYCLDIFYFSKLGVVNQLRIEHYFMHLDEHINKRDPSLRCQKCSLSFLEKGDLK 925
            ..|.:...|.||:||.||   :.|:       .|..|...|..:.  ..:|.||.|.||...:..
  Rat   413 KCHVNTKNLLCPFCLKIF---RTGM-------PYMCHCRGHWERN--GHQCSKCRLQFLTFKEKM 465

  Fly   926 QHAVQHHVSMTKTNRPVRLLLNNSMLIPPPKIRTHHREQPPFSTYKRPVFFAFLEGKTCAECNTD 990
            :|..|.|....|..:...|         ||:.:.      ......:||.         || :.:
  Rat   466 EHKTQCHQMFRKPKQLEGL---------PPETKV------VIQVSVKPVE---------AE-SVE 505

  Fly   991 FASEETHYTGWLHCVKCNYQTCCERAQFR 1019
            .||.....|.|        :..|.|:|.|
  Rat   506 VASITVSTTDW--------EPSCPRSQGR 526

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rowNP_001260992.1 C2H2 Zn finger 777..798 CDD:275368 5/20 (25%)
C2H2 Zn finger 812..833 CDD:275368 5/20 (25%)
C2H2 Zn finger 842..858 CDD:275368 7/15 (47%)
Zfp280bNP_001099854.1 DUF4195 52..219 CDD:404681 31/172 (18%)
C2H2 Zn finger 334..355 CDD:275368 5/20 (25%)
C2H2 Zn finger 364..385 CDD:275368 5/20 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm45293
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
32.870

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