Protein Alignment row and ham-2

DIOPT Version :10

• Sequence 1: NP_001260992.1
• Gene: row / 36685
• FlyBaseID: FBgn0033998
• Length: 1301
• Species: Drosophila melanogaster
• Sequence 2: NP_001024364.2
• Gene: ham-2 / 180727
• WormBaseID: WBGene00001821
• Length: 392
• Species: Caenorhabditis elegans
• Alignment Length: 167
• Identity: 39/167 - (23%)
• Similarity: 55/167 - (32%)
• Gaps: 59/167 - (35%)

  Fly   809 SYYCLICQQ--RHN---SLHLLTAHLQKVHSTLELPYWCHSCGYRSSSHRDLVRHFYDDHKHQNF 868
            |:.|.|||:  .|:   |.|.:.||.:.        |.|.:|.....|:..|..|.|..|
 Worm    15 SFPCSICQKVFCHSSSLSRHRMQAHFKS--------YTCTTCNNEIPSNDTLRSHMYRVH----- 66

  Fly   869 LQCPYCLDIFYFSKLGVVNQLRIEHYFMHLDEHINKRDPSLRCQKCSLSFLEKGDLKQHAVQHHV 933
                                 .|...||              |:.|:.:|.:|..|  |.  |..
 Worm    67 ---------------------NITRMFM--------------CRCCNWAFPDKTSL--HI--HMQ 92

  Fly   934 SMTKTNRP--VRLLLNNSMLIPPPKIRTHHREQPPFS 968
            ||.|...|  ..:|..:|.::.........|:.||||
 Worm    93 SMLKNGTPGEAAVLAKSSDVVDSTSESGSPRQSPPFS 129

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
row	NP_001260992.1	C2H2 Zn finger	777..798	CDD:275368
		C2H2 Zn finger	812..833	CDD:275368	9/25 (36%)
		C2H2 Zn finger	842..858	CDD:275368	4/15 (27%)
ham-2	NP_001024364.2	zf-C2H2	16..39	CDD:395048	7/22 (32%)
		C2H2 Zn finger	18..39	CDD:275368	7/20 (35%)
		C2H2 Zn finger	45..66	CDD:275368	6/20 (30%)
		C2H2 Zn finger	74..91	CDD:275368	6/20 (30%)