DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8089 and Ctcfl

DIOPT Version :10

Sequence 1:NP_611014.1 Gene:CG8089 / 36679 FlyBaseID:FBgn0033993 Length:624 Species:Drosophila melanogaster
Sequence 2:NP_001342114.1 Gene:Ctcfl / 664799 MGIID:3652571 Length:646 Species:Mus musculus


Alignment Length:411 Identity:83/411 - (20%)
Similarity:142/411 - (34%) Gaps:89/411 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   172 YKCENLPW--KKLQDVEDHQKTHRYSDNFHCQICYRRFYLQHSLTSHIIRKS------------- 221
            ::|:..|:  .||.....|.|.|.......|.:|.:.|.....|.:|:...:             
Mouse   257 FQCDTCPFTSSKLSTFNRHIKIHSNERPHLCHLCLKAFRTVTLLRNHVNTHTGTRPHKCRDCDMA 321

  Fly   222 -TSSRELHENKRYKRLLENQKSQEEKELELSLNKVEDILVPVAEDLQSYFKDES-KHPIQKRKTS 284
             .:|.||..::|||...       ||..:.||.|...:   .|..::.:.:..: :.|.|     
Mouse   322 FVTSGELVRHRRYKHTY-------EKPFKCSLCKYASV---EASKMKRHIRSHTGERPFQ----- 371

  Fly   285 SLSKCPSCAQNYGFSFSHQLHMVKHRRERLYTNFPFHCSFCNRSFL---TRK--FLRKHQQRVRT 344
                |..||.....|:..:.||..|..|:     |:.|..|:..|.   |.|  ..:||.:.|  
Mouse   372 ----CCQCAYASRDSYKLKRHMRTHSGEK-----PYECPTCHVRFTQSGTMKIHIAQKHGENV-- 425

  Fly   345 FSTLLYRPFKCPHCTWRFQLKSALDSHVLRIHERRKPCLICKLPTSRLCCSAHTSKEC---NRAM 406
                  ..::||||......||.|..|:..:|.:....:.|     |.|.:....:..   ::..
Mouse   426 ------PKYECPHCATIIARKSDLRVHLRNLHSQSPEEMKC-----RYCPAGFHERYALIQHQRT 479

  Fly   407 QKYRDKMRPLREPPKGGCRKQPTPVCKICNRKFTRKFFLEEHMNKAHLNKRNFTCEICGANFYSQ 471
            .|...|.:                 ||.|:....::..|:.|| :.|..::.|:|..|..:|..:
Mouse   480 HKNEKKFK-----------------CKQCDYACKQERCLKAHM-RMHTGEKPFSCLACNKHFRQK 526

  Fly   472 GTMQTHRKAVH---LLVHTVQCEVCDLTIKSKGNYRRHCK--SQSHKDNLVKFGKNNDKTKDSNR 531
            ..:..|.:..|   .:.:...|..||.......|.:||.|  ...|:    ....|.|:...:..
Mouse   527 QLLTVHLRKYHDPNFVPNLHLCLKCDKRFSRWSNLQRHRKKCDPEHE----TLAPNKDRRPVTRT 587

  Fly   532 RKGARTTDEKLDIEASSSTNT 552
            :........|.|:....|..:
Mouse   588 QASEGEAGHKEDVATQESATS 608

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8089NP_611014.1 C2H2 Zn finger 289..309 CDD:275368 6/19 (32%)
SUF4-like 322..>376 CDD:411020 16/58 (28%)
C2H2 Zn finger 322..352 CDD:411020 8/34 (24%)
C2H2 Zn finger 322..343 CDD:275368 7/25 (28%)
C2H2 Zn finger 355..376 CDD:411020 8/20 (40%)
C2H2 Zn finger 355..376 CDD:275368 8/20 (40%)
C2H2 Zn finger 432..453 CDD:275368 6/20 (30%)
C2H2 Zn finger 461..486 CDD:275368 5/27 (19%)
C2H2 Zn finger 490..506 CDD:275368 4/15 (27%)
CtcflNP_001342114.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 17..38
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 160..195
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 222..257 83/411 (20%)
COG5048 <256..491 CDD:227381 59/287 (21%)
C2H2 Zn finger 259..279 CDD:275368 6/19 (32%)
C2H2 Zn finger 287..307 CDD:275368 5/19 (26%)
C2H2 Zn finger 315..333 CDD:275368 3/17 (18%)
C2H2 Zn finger 344..364 CDD:275368 4/22 (18%)
C2H2 Zn finger 372..392 CDD:275368 6/19 (32%)
C2H2 Zn finger 400..417 CDD:275368 5/16 (31%)
C2H2 Zn finger 460..480 CDD:275368 3/24 (13%)
zf-H2C2_5 486..510 CDD:404746 7/41 (17%)
C2H2 Zn finger 488..508 CDD:275368 6/20 (30%)
zf-H2C2_2 501..525 CDD:463886 8/24 (33%)
C2H2 Zn finger 516..534 CDD:275368 4/17 (24%)
Blue background indicates that the domain is not in the aligned region.

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