DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8089 and Repin1

DIOPT Version :9

Sequence 1:NP_611014.1 Gene:CG8089 / 36679 FlyBaseID:FBgn0033993 Length:624 Species:Drosophila melanogaster
Sequence 2:XP_006236485.1 Gene:Repin1 / 445541 RGDID:1549707 Length:639 Species:Rattus norvegicus


Alignment Length:542 Identity:124/542 - (22%)
Similarity:176/542 - (32%) Gaps:204/542 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   141 RSVSQLAGQE-------AHGALR-PKIAALFLPGLRCD------CYKC----ENLPWKKLQDVED 187
            :||:|..|..       ||...| |...||:|...||.      |::|    .:.|:..|     
  Rat   130 KSVAQPGGPAPVKVHRCAHCRKRFPGWVALWLHTRRCQARLPLPCHECNQRFRHAPFLAL----- 189

  Fly   188 HQKTHRYSD---NFHCQICYRRFYLQHSLTSHIIRKSTSSREL---HENKRYKRLLENQKSQEEK 246
            |.:.|..:.   .|.|.:|...|....:|..|:...|.|.|.:   ..|||:.|         :|
  Rat   190 HLQVHASAVPDLGFICHLCGHSFRGWVALVLHLRAHSASKRPITCPECNKRFWR---------QK 245

  Fly   247 ELELSLNKVEDILVPVAEDLQSYFKDESKHPIQKRKTSSLSKCPSCAQNYGFSFSHQLHMVKHRR 311
            :|...|.:.:    |.|.:.:.:.                  |.:|    |.||:....:|.|:|
  Rat   246 QLRAHLRRCQ----PPAPEARPFI------------------CGNC----GRSFAQWDQLVVHKR 284

  Fly   312 ERL------------------------------YTNFPFHCSFCNRSFLTRKFLRKHQQRVRTFS 346
            ..:                              ..:.||.|:.|.:.|..:..|..| :||.|..
  Rat   285 VHVAEALEEAAAKALGPRPRGRPSVTAPRPGGDAVDRPFQCACCGKRFRHKPNLIAH-RRVHTGE 348

  Fly   347 TLLYRPFKCPHCTWRFQLKSALDSHVLRIH--ERRKPCLIC---------KLPTSRLCCSAHTSK 400
                ||.:||.|..||..|..|.|| .|||  |:..||..|         .|..|::...:..|.
  Rat   349 ----RPHQCPECGKRFTNKPYLTSH-RRIHTGEKPYPCTECGRRFRHKPNLLSHSKIHKRSEVSA 408

  Fly   401 ECNRAMQKYRDKMRPLREP----PKGGCRKQPTPV--------CKICNRKFTRKFFLEEHMNKAH 453
            :.......:.....|:.:|    |.|..|   ||.        |..|.|.|..:.||..| .:.|
  Rat   409 QAASHTGSHLIAAEPMAQPALGVPLGSLR---TPAEAPASLHSCTDCGRSFRLERFLRLH-QRQH 469

  Fly   454 LNKRNFTCEICGANF---------------------------YSQGT-MQTHRK----------- 479
            ..:|.|||..||.||                           :|||: :..||:           
  Rat   470 TGERPFTCTECGKNFGKKTHLVAHSRVHSGERPFACEECGRRFSQGSHLAAHRRDHAPERPFVCP 534

  Fly   480 ------------AVHLLVHTVQ----CEVCDLTIKSKGNYRRH--------------C-KSQSHK 513
                        |.|..:||.:    |..|......|.|...|              | :|.|.|
  Rat   535 DCGKAFRHKPYLAAHRRIHTGEKPYVCPDCGKAFSQKSNLVSHRRIHTGERPYACPDCDRSFSQK 599

  Fly   514 DNLVKFGKNNDKTKDSNRRKGA 535
            .||:...|       |:.|.||
  Rat   600 SNLITHRK-------SHIRDGA 614

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8089NP_611014.1 C2H2 Zn finger 289..309 CDD:275368 6/19 (32%)
C2H2 Zn finger 322..343 CDD:275368 6/20 (30%)
C2H2 Zn finger 355..376 CDD:275368 10/20 (50%)
C2H2 Zn finger 432..453 CDD:275368 7/20 (35%)
C2H2 Zn finger 461..486 CDD:275368 12/75 (16%)
C2H2 Zn finger 490..506 CDD:275368 4/15 (27%)
Repin1XP_006236485.1 C2H2 Zn finger 146..166 CDD:275368 7/19 (37%)
C2H2 Zn finger 174..194 CDD:275368 5/24 (21%)
C2H2 Zn finger 205..225 CDD:275368 5/19 (26%)
COG5048 <225..399 CDD:227381 49/214 (23%)
C2H2 Zn finger 234..254 CDD:275368 7/28 (25%)
C2H2 Zn finger 266..286 CDD:275368 8/23 (35%)
C2H2 Zn finger 325..345 CDD:275368 6/20 (30%)
zf-H2C2_2 337..362 CDD:290200 12/29 (41%)
COG5048 <341..612 CDD:227381 70/287 (24%)
C2H2 Zn finger 353..373 CDD:275368 10/20 (50%)
zf-H2C2_2 365..390 CDD:290200 10/25 (40%)
C2H2 Zn finger 381..401 CDD:275368 4/19 (21%)
C2H2 Zn finger 449..469 CDD:275368 7/20 (35%)
zf-H2C2_2 462..484 CDD:290200 9/22 (41%)
C2H2 Zn finger 477..497 CDD:275368 5/19 (26%)
zf-H2C2_2 489..514 CDD:290200 0/24 (0%)
C2H2 Zn finger 505..525 CDD:275368 5/19 (26%)
C2H2 Zn finger 533..553 CDD:275368 2/19 (11%)
zf-H2C2_2 545..570 CDD:290200 6/24 (25%)
C2H2 Zn finger 561..581 CDD:275368 5/19 (26%)
zf-H2C2_2 573..598 CDD:290200 4/24 (17%)
C2H2 Zn finger 589..609 CDD:275368 7/26 (27%)
C2H2 Zn finger 617..637 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24406
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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