DRSC/TRiP Functional Genomics Resources

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Protein Alignment chn and Rbak

DIOPT Version :9

Sequence 1:NP_001246331.1 Gene:chn / 36678 FlyBaseID:FBgn0015371 Length:1286 Species:Drosophila melanogaster
Sequence 2:NP_001178593.1 Gene:Rbak / 288489 RGDID:1562875 Length:711 Species:Rattus norvegicus


Alignment Length:415 Identity:85/415 - (20%)
Similarity:136/415 - (32%) Gaps:103/415 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   214 VNQQQQQQQQPHQSTPKSK---------KHRQEHAAELIYASPSTSANAAQNLAQSTPTSAPSNS 269
            |:::...:::|::.....|         :|::.|:.|    .|...:...:...|.|..:....:
  Rat   303 VHRRSHLEEKPYKCDECGKTFCQKLHLTQHQRTHSGE----KPYECSECGKTFCQKTHLTLHQRN 363

  Fly   270 SGGS----TSSSGGGGGRKKAAQAAAAAAAANGVHIQKRYACTHCPYSTDRRDLYTRHENIHKDE 330
            ..|.    .|..|....||.|..........     :|.|.|..|..|..|:.....|:..|..|
  Rat   364 HSGERPYPCSECGKSFSRKSALNDHQRTHTG-----EKLYTCNECGKSYYRKSTLITHQRTHTGE 423

  Fly   331 KPFQCYACLKQFNRADHVKKHFLRMHRELQ----------YDINKT-RRHVSAGS-------GSS 377
            ||:||..|.|.|:|..::..|: |.|.|.:          :::|.. .||..|.:       |..
  Rat   424 KPYQCSECGKFFSRVSYLTIHY-RSHLEEKPYECTECGKTFNLNSAFTRHRKAHAEERVQECGEC 487

  Fly   378 GSGS---------SGSGSHHSGGRGNVTINSAGVNIDNAFLE----AQRHPTSSSMSIVETIEAV 429
            |..|         .|.|..|.|      .|..|    ..|||    ::..|........|.....
  Rat   488 GKPSRLQYLPDHADGLGEKHHG------CNECG----KTFLENSAFSRHQPVPEGEKTYECNICG 542

  Fly   430 ASATDMPLAQLKQEKMDDGAGVVLPLHVGVMQQPVASSSSGSSGSHGGNGNGGSGSGLLKPKR-- 492
            ...:|:....:......:             ::|...|..|.:.||        .|.|.:.:|  
  Rat   543 KVFSDLSCYTVHYRGHSE-------------EKPFGCSECGKTFSH--------NSSLFRHQRVH 586

  Fly   493 --EKRFTCCYCPWSGADKWGLKRHLNTHT--KPFVCLLCDYKAARSERLATHVLKVHNKR--ACS 551
              ||.:.|..|....:.|..|..|...|:  ||:.|..|....:|...|..|......::  .|:
  Rat   587 TGEKPYECYECGKFFSQKSYLTIHHRIHSGEKPYECSKCGKVFSRMSNLTVHYRSHSGEKPYECN 651

  Fly   552 KC-------SYLADTQEEYQAHMSD 569
            :|       |||.   ..|:.|..:
  Rat   652 ECGKVFSQKSYLT---VHYRTHSGE 673

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chnNP_001246331.1 C2H2 Zn finger 307..327 CDD:275368 5/19 (26%)
C2H2 Zn finger 335..356 CDD:275368 7/20 (35%)
C2H2 Zn finger 498..518 CDD:275368 5/19 (26%)
C2H2 Zn finger 524..545 CDD:275368 5/20 (25%)
RbakNP_001178593.1 KRAB 8..68 CDD:214630
KRAB 8..47 CDD:279668
COG5048 255..694 CDD:227381 85/415 (20%)
C2H2 Zn finger 260..280 CDD:275368
C2H2 Zn finger 288..308 CDD:275368 1/4 (25%)
zf-H2C2_2 301..323 CDD:290200 3/19 (16%)
zf-C2H2 314..336 CDD:278523 2/21 (10%)
C2H2 Zn finger 316..336 CDD:275368 2/19 (11%)
zf-H2C2_2 328..351 CDD:290200 4/26 (15%)
C2H2 Zn finger 344..364 CDD:275368 2/19 (11%)
zf-H2C2_2 356..381 CDD:290200 3/24 (13%)
C2H2 Zn finger 372..392 CDD:275368 5/19 (26%)
zf-C2H2 398..420 CDD:278523 6/21 (29%)
C2H2 Zn finger 400..420 CDD:275368 5/19 (26%)
zf-H2C2_2 413..437 CDD:290200 10/23 (43%)
C2H2 Zn finger 428..448 CDD:275368 7/20 (35%)
C2H2 Zn finger 456..476 CDD:275368 3/19 (16%)
C2H2 Zn finger 510..530 CDD:275368 6/23 (26%)
C2H2 Zn finger 538..558 CDD:275368 1/19 (5%)
C2H2 Zn finger 566..586 CDD:275368 7/27 (26%)
zf-H2C2_2 578..603 CDD:290200 6/24 (25%)
C2H2 Zn finger 594..614 CDD:275368 5/19 (26%)
zf-H2C2_2 606..631 CDD:290200 7/24 (29%)
C2H2 Zn finger 622..642 CDD:275368 5/19 (26%)
zf-H2C2_2 634..659 CDD:290200 4/24 (17%)
C2H2 Zn finger 650..670 CDD:275368 6/22 (27%)
zf-H2C2_2 662..687 CDD:290200 4/15 (27%)
C2H2 Zn finger 678..698 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24392
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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