DRSC/TRiP Functional Genomics Resources

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Protein Alignment chn and Zfp959

DIOPT Version :10

Sequence 1:NP_001246331.1 Gene:chn / 36678 FlyBaseID:FBgn0015371 Length:1286 Species:Drosophila melanogaster
Sequence 2:NP_663465.1 Gene:Zfp959 / 224893 MGIID:2385058 Length:539 Species:Mus musculus


Alignment Length:621 Identity:118/621 - (19%)
Similarity:181/621 - (29%) Gaps:199/621 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 GQSSNVEATY-----EDMFKEITRKLY--------GEETGNGLHTLGTPVAQVATSGPTAVPEGE 67
            |:..|..:.|     .::|....|:.|        |.|....|..||.||               
Mouse    63 GRCINCPSAYGKKQCTNLFPRTIRRRYVVTPFVRRGGECDTSLQVLGFPV--------------- 112

  Fly    68 QRSFTNLQQLDRSAAPSIEYESSAAGASGNNVATT----------------QANVIQQQQQQQQQ 116
              |....|..||...||::.||..:.....::.|.                :|.....|::.|..
Mouse   113 --SVGIHQNTDRGEKPSVDKESGKSPVCPGSLCTCRVTHSIGECYECSQCGKALSCSLQRRVQTH 175

  Fly   117 AESGNSVVVTASSGATVVPAPSVAAVGGFKSEDHLSTAFGLAALMQNGFAAGQAGLLKAGEQQQR 181
            ...||.....:|...|                                              ..|
Mouse   176 MGKGNDKCEPSSKSLT----------------------------------------------HPR 194

  Fly   182 WAQDGSGLVAAAAAEPQLVQWTSGGKLQSYAHVNQQQQQQQQPHQSTPKSKKHRQEHAAELIYAS 246
            :.|    :...|..|..|..|...||.....|        |:.|..   .|.....|..:||   
Mouse   195 YLQ----IQKTAYNEEDLYVWNQCGKSSLQLH--------QRNHLG---MKSCEYNHEDKLI--- 241

  Fly   247 PSTSANAAQNLAQSTPTSAPSNSSGGSTSSSGGGGGRKKAAQAAAAAAAANGVHI-QKRYACTHC 310
                  :.||..|...|:.      ..|.......|  ||....:.......:|. :|.|.|:.|
Mouse   242 ------SHQNCNQVGRTNT------RDTKHDYHQWG--KAFTCPSYLQIYERIHTEEKPYECSQC 292

  Fly   311 PYSTDRRDLYTRHENIHKDEKPFQCYACLKQFNRADHVKKHFLRMHRELQYDINKTRRHVSAGSG 375
            ..:.........||.||..|||::|..|.|.|     ..|.:|::|.::                
Mouse   293 GRAFTCHSTLQIHERIHTGEKPYKCNQCDKTF-----ACKRYLQIHEKI---------------- 336

  Fly   376 SSGSGSSGSGSHHSGGRGNVTINSAGVNIDNAFLEAQRHPTSSSMSIVETIEAVASATDMPLAQL 440
                        |:|.: ....|..|..     ...:|:     :.:.|.|.|...     |.:.
Mouse   337 ------------HTGEK-PYKCNQCGKT-----FACKRY-----LQVHERIHAAEK-----LYKC 373

  Fly   441 KQEKMDDGAGVVLPLH--VGVMQQPVASSSSGSSGSHGGNGNGGSGSGLLKPKR----EKRFTCC 499
            .|..........|.:|  :...::|...:..|.:.:        ..|.|.|.:|    |||:.|.
Mouse   374 NQCGKAFACNSYLQMHERIHTGEKPYKCNHCGKAFA--------CNSNLQKHERIHTGEKRYKCK 430

  Fly   500 YCPWSGADKWGLKRHLNTHT--KPFVCLLCDYKAARSERLATHVLKVHNKR---ACSKCSYLADT 559
            .|..:.|....|::|..|||  ||:.|..|.........|..|. ::|...   .|::|....|.
Mouse   431 QCGKAFAYSSNLQKHERTHTGEKPYKCNQCGKAFTCHSSLQIHE-RIHTGEKPYKCNQCGKPFDR 494

  Fly   560 QEEYQAHMSDVHPHDNRPARSGNGNQSGGSSSGNSN 595
            :.....| ..:|..: :|...   ||.|.|.:.:|:
Mouse   495 KRYLHIH-ERIHTGE-KPYEC---NQCGKSFAYSSS 525

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chnNP_001246331.1 C2H2 Zn finger 307..327 CDD:275368 4/19 (21%)
C2H2 Zn finger 335..356 CDD:275368 6/20 (30%)
C2H2 Zn finger 498..518 CDD:275368 5/19 (26%)
C2H2 Zn finger 524..545 CDD:275368 4/20 (20%)
Zfp959NP_663465.1 KRAB 4..44 CDD:460171
C2H2 Zn finger 265..281 CDD:275368 3/17 (18%)
C2H2 Zn finger 289..309 CDD:275368 4/19 (21%)
zf-H2C2_2 302..326 CDD:463886 11/28 (39%)
C2H2 Zn finger 317..337 CDD:275368 7/52 (13%)
zf-H2C2_2 329..354 CDD:463886 6/58 (10%)
C2H2 Zn finger 345..365 CDD:275368 4/29 (14%)
COG5048 <369..502 CDD:227381 32/147 (22%)
C2H2 Zn finger 373..393 CDD:275368 3/19 (16%)
C2H2 Zn finger 401..421 CDD:275368 5/27 (19%)
C2H2 Zn finger 429..449 CDD:275368 5/19 (26%)
C2H2 Zn finger 457..477 CDD:275368 4/20 (20%)
C2H2 Zn finger 485..505 CDD:275368 4/20 (20%)
zf-H2C2_2 501..522 CDD:463886 7/25 (28%)
C2H2 Zn finger 513..533 CDD:275368 5/16 (31%)
Blue background indicates that the domain is not in the aligned region.

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