DRSC/TRiP Functional Genomics Resources

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Protein Alignment ckn and sash1b

DIOPT Version :10

Sequence 1:NP_611009.1 Gene:ckn / 36673 FlyBaseID:FBgn0033987 Length:924 Species:Drosophila melanogaster
Sequence 2:XP_073784235.1 Gene:sash1b / 566448 ZFINID:ZDB-GENE-110228-1 Length:1157 Species:Danio rerio


Alignment Length:793 Identity:138/793 - (17%)
Similarity:241/793 - (30%) Gaps:315/793 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   259 LIIDWLLEMKHEEYAQLFIAAGY-DLPTIARMTPEDLTAIGIKNPHHRERIKQRIDKLQ------ 316
            ::.:||..::..:|.:.|:..|| ||....::...||.|||:.:|||||::.:.:::|:      
Zfish    14 IVYEWLKTLQLCQYVESFVDNGYDDLEVCKQIGNPDLDAIGVISPHHREKLLRAVERLRDEDKKV 78

  Fly   317 ------VLDNLPH-FVPG----------SIEEWL-------------QLLRLEEYIQPLLEQNYK 351
                  .|:.||| ..|.          |.:.|:             .:..||.:.:|::....|
Zfish    79 APALYFTLEPLPHGTYPNTSQISDCKQKSTKSWVNSTCDRPRIGFSSDITTLEIHKEPVVYPKLK 143

  Fly   352 TVRDVTQVTWEDLEDIGIVKLGHQKKILLAIKRVKDII-------SGKWNPGGANAYQQQEYQRK 409
            .                        ||::..|.|||.|       |.|....|..|...|||.  
Zfish   144 L------------------------KIMIRDKLVKDGIDLSKMPYSYKDGSLGNIADLAQEYS-- 182

  Fly   410 PWQFNVPIPSTPSYVPTTRVSWDDTKIYATSSVLNSTAPSGSSCLNSSLANGDAYYCTGSNHECC 474
                        .|..|:.....|.........:...|.:|.:...:||.               
Zfish   183 ------------EYYSTSYSEVCDRMEELRKRRVTQEAETGKAESTTSLQ--------------- 220

  Fly   475 SGNDVVLIKVRQPRGKS-------LESLEDIHDNST-----------RSHLTFSHYTTTDYGHFG 521
                 :.:::::..|.|       :|..:.:|.:|:           ::...:.::.....|.|.
Zfish   221 -----LRLEIQETLGLSSAVSTPEIERRQTMHKSSSEDGSAGRWDRKKNKSFWQNFRKAQKGSFR 280

  Fly   522 PPTTAAAAAAMAAAATLQQQHHHQQLLHQQQQ----QAAAARL--------LGNNAPGIGWRRSY 574
            .|........:|:..|:..:...|.::..:::    :.|.|||        ..|:|....|..  
Zfish   281 TPPKGEDLGFVASEITMSDEERIQLMMMVKEKMITVEEALARLKEYETQNKQSNSADMTDWTE-- 343

  Fly   575 DDGDITPTNDATRELLYEQEGGGTLPRQQRGILQRAVLNTMPPLEHHHYMNAAAAAEYGAASGVE 639
                 ||:...|........      .|....|:.:|  |...|  |..:|:...          
Zfish   344 -----TPSPSMTESSYCNSR------EQSEDELEESV--TFRRL--HKLVNSTRR---------- 383

  Fly   640 GGANYMGGSPLTGKKIAPEPPRRHCSIRNSRTLSGEGVPSGAAAQAHQQAAQQQQGQHMFYGHTA 704
                      :..|.|..:..::|.|   ...||.|..|||             :|..::.|   
Zfish   384 ----------VRKKLIRIDEAKKHGS---KDMLSLEASPSG-------------EGVSLYSG--- 419

  Fly   705 QHWQQQQQQAGAGTGQQPIYANYATIQQTTAEIHCEKYHDSKSTSSIDSIDTIPFANE-NTGTIK 768
                              ::...|.:|:..               |:||:.|.|.::. :|.:..
Zfish   420 ------------------VHKREAGVQEQL---------------SLDSLSTSPSSSSLDTSSSG 451

  Fly   769 QRLL-------NRQELQG------------GGAGNNNVPGGG-------------------HPAH 795
            |||.       :.|.|:.            ||:|::.....|                   :||:
Zfish   452 QRLFRAFSKSCSAQGLEAPAGPTGQGSELDGGSGSSFSEADGELEPRMSRSVTDGEMRRALNPAN 516

  Fly   796 LH------------------SSSSS-------------SSSSSTNTIANIAHSFHSLKSS----- 824
            .|                  |||||             ||.|.|.:..::.....|:|.:     
Zfish   517 YHGRTCSFGGFDLTSRSVYMSSSSSDPTNENSEISLRDSSRSPTPSRISLGKKVKSVKETMRKRI 581

  Fly   825 SSLHDATLARSESMGSTAS-------------------GGSALHLRSPTLDMSNAGGSTAEPASS 870
            |..:.::|:...|.....|                   |||...|||.....|:..|.|.....|
Zfish   582 SKKYSSSLSEQSSPSRAPSSPQSPHTDTDSLEKPKLKAGGSVESLRSSLSGQSSMSGQTVSTTDS 646

  Fly   871 PEAAVPTVAINNG 883
            ..:...:|...:|
Zfish   647 SASNRESVKSEDG 659

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cknNP_611009.1 SAM_caskin1,2_repeat1 254..319 CDD:188896 19/72 (26%)
SAM_caskin1,2_repeat2 320..390 CDD:188897 17/100 (17%)
Caskin-tail <887..912 CDD:465209
sash1bXP_073784235.1 None
Blue background indicates that the domain is not in the aligned region.

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