DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ckn and sash3

DIOPT Version :9

Sequence 1:NP_611009.1 Gene:ckn / 36673 FlyBaseID:FBgn0033987 Length:924 Species:Drosophila melanogaster
Sequence 2:XP_690443.4 Gene:sash3 / 561954 ZFINID:ZDB-GENE-130411-1 Length:386 Species:Danio rerio


Alignment Length:311 Identity:64/311 - (20%)
Similarity:107/311 - (34%) Gaps:99/311 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   143 KPGVAMVPPPPVFCATLREPLTHKAAVYYHQQLALQEDQGIDLTQS--------PGRDSPGSSSG 199
            ||...:..|.|:...:|.|....:.:...|.:|..:....|..|.:        ......|:.||
Zfish    36 KPSSPVTNPEPLLNESLFEAAPPEESGKSHGKLGKKWRNVITRTMTRKTSKMVQKALAEEGNESG 100

  Fly   200 SAGSGSRHS----TASLDSGRASSYLTGVSSSGASIRAPLSSPRCSSVSSCSIGSVDRQRNDELI 260
            ..||.|..|    |..|.:|..:|..:  :||..:|.:|||    ..:|.|:    |||..|   
Zfish   101 EDGSMSPMSPTDWTPDLTAGNRTSVCS--NSSEDTIHSPLS----RQLSGCA----DRQSLD--- 152

  Fly   261 IDWLLEMKHEEYAQLFIAAGYDLPTIARMTPEDLTAIG------------IKNPHHRERIK-QRI 312
                              :|:......|:  ||.|.:|            ..:|:..:.:| |:.
Zfish   153 ------------------SGFSQRDSMRL--EDSTYMGPFCGRAVVITDFTPSPYDIDCLKLQKG 197

  Fly   313 DKLQVLDNLP---------------HFV--------------------------PGSIEEWLQLL 336
            |.:|:::..|               .||                          |.::||.|:.:
Zfish   198 DIIQIIEKPPVGTWTGKLNNKVGSFKFVYVSMLPEEETPPKRKRSHSHGHQKAKPKTLEEVLERI 262

  Fly   337 RLEEYIQPLLEQNYKTVRDVTQVTWEDLEDIGIVKLGHQKKILLAIKRVKD 387
            .|.|....|....::::.|.|.:....|.|:.|.....:.|||.|.:.:.|
Zfish   263 GLTELGSLLSMHGFQSLEDFTGLKESHLNDLNITDPEQRVKILKATELIHD 313

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cknNP_611009.1 SAM_caskin1,2_repeat1 254..319 CDD:188896 13/77 (17%)
SAM 260..316 CDD:197735 10/68 (15%)
SAM_caskin1,2_repeat2 320..390 CDD:188897 20/109 (18%)
SAM 326..387 CDD:197735 16/60 (27%)
Caskin-tail <887..912 CDD:293238
sash3XP_690443.4 SLY 23..172 CDD:289268 39/168 (23%)
SH3 174..229 CDD:302595 8/54 (15%)
SAM_SASH-like 251..310 CDD:188892 16/58 (28%)
SAM 252..311 CDD:197735 16/58 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4384
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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