DRSC/TRiP Functional Genomics Resources

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Protein Alignment ckn and SKIP

DIOPT Version :10

Sequence 1:NP_611009.1 Gene:ckn / 36673 FlyBaseID:FBgn0033987 Length:924 Species:Drosophila melanogaster
Sequence 2:NP_001262827.1 Gene:SKIP / 42601 FlyBaseID:FBgn0051163 Length:1080 Species:Drosophila melanogaster


Alignment Length:709 Identity:139/709 - (19%)
Similarity:227/709 - (32%) Gaps:248/709 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   259 LIIDWLLEMKHEEYAQLFIAAGY-DLPTIARMTPEDLTAIGIKNPHHRERIKQRIDKLQ------ 316
            ::.:||..:...:||:.|:..|| ||....::...||.|||::||.||.::.:.|..|:      
  Fly     6 IVCEWLRALGLAQYAESFLDNGYDDLEICKQVGDPDLDAIGVENPAHRHKLLKSIRSLREKGAAS 70

  Fly   317 --VLDNLPHFVPGSIEEWLQLLRLEEYIQPLLEQNYKTVRDVTQVT-----------WEDLEDIG 368
              .:.|.|:.:.||:|...:.....| ::.:|.:..:|  |..::|           ..|.|:..
  Fly    71 VYFMLNDPNSLSGSMEILCETPPNNE-LELVLREQLET--DGVRLTAHPYSTPPSSCLSDKEEDE 132

  Fly   369 IVKLGH-------------QKKILLAIKRVKDIISGKWNPGGANAYQQQEYQRKPWQFNVPI-PS 419
            |...|:             |::.||..:.::.          ..:.|||:.|.:..|..:|| |.
  Fly   133 IYGFGYGVFAPRVARGGLTQQQQLLQQQTLQT----------QQSIQQQQQQMQQQQQQLPIVPG 187

  Fly   420 TPSYVPTTRVSWDDTKIYATSSVLNSTAPSGSSCLN----SSLANGDAYYC----TGSNHECCSG 476
            .....|..                :.|.|...:.||    :.|:...||:.    |....|    
  Fly   188 QQQQGPHQ----------------HQTLPPNVAHLNFVQQNCLSPRSAYFYEFPPTAEGRE---- 232

  Fly   477 NDVVLIKVRQPRGKSLESLEDIH--DNSTRSHLTFSHYTTTDYGHFGPPTTAAAAAAMAAAATLQ 539
                 .|.|....:.|:.|:.::  |.:.:.:...:........||          .|.......
  Fly   233 -----TKKRTTLARLLKGLKTVNRRDRNNQQNGAQARAANDRLRHF----------QMINGGAGG 282

  Fly   540 QQHHHQQLLHQQQQQAAAARLLGNNAPGIGWRRSYDDGDITPTNDATRELLYEQEGGGTLPRQQR 604
            |||..::.:|:.:.|.|..:       ...::|.:::    ...|..:.||....|.|.:     
  Fly   283 QQHSFEETIHRLKVQEAMRK-------KEKFQREHEE----ILRDIRQGLLQMSRGEGRM----- 331

  Fly   605 GILQRAVLNTMPPLEHHHYMNAAAAAEYGAASGVEGGANYMG-GSPLTGKKIAPEPPRRHCSIRN 668
                           ...||       |..|....||....| |.||                  
  Fly   332 ---------------DDTYM-------YDEALRTGGGMGIAGLGMPL------------------ 356

  Fly   669 SRTLSGEGVPSGAAAQAHQQAAQQQQGQHMFYGHTAQHWQQQQQ---------QAGAGTGQQPIY 724
              .:.|.|...|||..|  .:|...||          ||..:..         .||...|..   
  Fly   357 --GVGGNGGGGGAAHYA--VSALHHQG----------HWYDEPPYESDPDDFLMAGLNCGPA--- 404

  Fly   725 ANYATIQQTTAEIHCEKYHDSKSTSSIDSIDTIPFAN--ENTGTIKQRLLNRQELQGGGAGNNNV 787
               ||||.                      ..:.|:|  |:||.|..|          .||:.::
  Fly   405 ---ATIQG----------------------GRVRFSNNRESTGVISLR----------SAGDISL 434

  Fly   788 PGGGHP---------------------AHLHSSSSSSSSSSTNTIANIAHSFHSLKSSSSLHDAT 831
            |..|.|                     |..|...|...:.|.:.:.::...|.::  |...::.|
  Fly   435 PQRGPPRRGLIVPQQPPNPPTIIPLTHARSHDRESGDYAGSISDLQSVTSRFSTV--SIGTNNCT 497

  Fly   832 LARSESMGSTASGGSALHLRSPTLDMSNAG-----GSTAEPASSPEAAVPTVAINNGVP 885
             ||..    |.|||..   .||:|..|.:.     |.|......|.:.:...|..||:|
  Fly   498 -ARYR----TLSGGIG---ESPSLSPSPSSDYEDIGVTRGHGCLPPSLLAAKAKKNGLP 548

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cknNP_611009.1 SAM_caskin1,2_repeat1 254..319 CDD:188896 20/68 (29%)
SAM_caskin1,2_repeat2 320..390 CDD:188897 17/93 (18%)
Caskin-tail <887..912 CDD:465209
SKIPNP_001262827.1 SAM_Samd5 4..65 CDD:188926 20/58 (34%)
SH3 657..710 CDD:473055
SAM_superfamily 742..800 CDD:472832
Blue background indicates that the domain is not in the aligned region.

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