DRSC/TRiP Functional Genomics Resources

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Protein Alignment ckn and CG44838

DIOPT Version :10

Sequence 1:NP_611009.1 Gene:ckn / 36673 FlyBaseID:FBgn0033987 Length:924 Species:Drosophila melanogaster
Sequence 2:NP_001287006.1 Gene:CG44838 / 39099 FlyBaseID:FBgn0266101 Length:828 Species:Drosophila melanogaster


Alignment Length:701 Identity:148/701 - (21%)
Similarity:214/701 - (30%) Gaps:217/701 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 QQPQQLHHHHHQH---PNHHHPHHQPSIPLYRLSGPLRHHQNHQADDGISMSGSSIVSSPSLEEG 95
            ||.||..|..:.|   ||..........|            |::|........||.|:|.|    
  Fly    51 QQQQQQQHQQYSHTHLPNGSSATAAADFP------------NYEATTTPQRENSSSVNSGS---- 99

  Fly    96 GFNLPRETSVALRLKDEVGGTSTAAPTT--GGPGGGGATVVGAPPPGAGKPGVAMVP-------- 150
            ..|.....|.|......|..:::||||:  |..|..|:|.:.|.|.....|.....|        
  Fly   100 SVNPAHYASAAASASASVEASASAAPTSTPGIAGAAGSTSLTATPSSNRWPTAVATPNGHQSTAS 164

  Fly   151 -----PPPV-----FCATLRE-----PLTHKAAV----YYHQQLALQEDQGID--LTQSPGRDSP 194
                 |...     |...||.     |.|..:|.    ...:|:::.: .|:.  .|..|...||
  Fly   165 TAGSVPQHFDGSFEFIKYLRHSTDFTPSTPSSATETSSCAEKQVSVSK-SGVQAGATPPPPAQSP 228

  Fly   195 ---------GSSSGSAGSGSRHSTASLDS-GRASSYLTGVSSS---------------------- 227
                     .|:|..:.|.||...|.|.| .|||:.|...|||                      
  Fly   229 VAGGLIDLDTSTSQKSRSASRKVAALLSSVSRASNSLVDTSSSALDVFDHDSKQTIFDLQHIASN 293

  Fly   228 GAS---------IRAPLSSPRCSSVSSCSIGSVDRQRNDELIIDWLLEMKHEEYAQLFIAAGYDL 283
            |:|         :..|.|....|:.::.|.|:......              |:..|...|....
  Fly   294 GSSNSNESSLEMLAFPNSHLNASNSNTSSEGAACGSAG--------------EFGGLLTGASCSS 344

  Fly   284 PTIARMT--PEDLTAIGIK-----NPHHR--ERIKQRIDKL-----QVLDNLPHFVPGSIEEWLQ 334
            .|.:..:  |:.|.:..||     :|.|:  |.|.|.::||     ..|..|.....|.:....:
  Fly   345 STASSSSHAPKLLGSFVIKENFEVHPSHKVEEGIFQHMNKLPSKKKDTLKQLGVRFTGQMTLTDK 409

  Fly   335 LLRLEEYIQPLLEQNYKTVRDVTQVTWEDLEDIGIVK---------LGH------------QKKI 378
            .:.:|.:|:...|.:.|..|     .|..|...|:.|         ||.            ..|.
  Fly   410 SIVVENFIKFCEEYDIKDHR-----PWLSLNQCGLNKPEQIKFARYLGQGLPTFTLFCIYSNFKN 469

  Fly   379 LLAIKRVKDIISGKWNPGGANAYQQQEYQRKPWQFNVPIPSTPSYVPTTRVSWDDTKIYATSSVL 443
            |...||.:             .|.:..|       |:|      |:      .|.||.:    :.
  Fly   470 LFCTKRTE-------------IYTKDGY-------NLP------YI------LDKTKRF----LA 498

  Fly   444 NSTAPSGSSCLNSSLAN-GDAYYCTGSNHECCSGNDVVLIKVRQPRGKSLESLEDIHDNSTRSHL 507
            |:||    ...|.:.|| |...:.|||.....|.|:            |.....:|..||..|..
  Fly   499 NTTA----DLKNMAAANDGSLEFATGSGGGSSSSNN------------SNTCNMNIGSNSNSSVS 547

  Fly   508 TFSHYTTTDYGHFGPPTTAAAAAAMAAAATLQQQHHHQQLLHQQQQQ------AAAARLLGNNAP 566
            :.|.......|....|......|....::|.|||.|..|..|.....      |..|.|.....|
  Fly   548 SGSSNPVLVPGSVINPNAVTMPAGYVTSSTAQQQQHQHQHQHPMTMDPRYGCGAPPALLPPPPLP 612

  Fly   567 GIGWRRSYDDGDITPTNDATRELLYEQEGGGTLPRQQRGILQRAVLNTMPP 617
            .:|          .|.....:.::||........|.:.|:...  ::.:||
  Fly   613 ALG----------PPPRSLEQLIIYENFDVHETHRIEDGVCTH--ISRLPP 651

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cknNP_611009.1 SAM_caskin1,2_repeat1 254..319 CDD:188896 15/78 (19%)
SAM_caskin1,2_repeat2 320..390 CDD:188897 17/90 (19%)
Caskin-tail <887..912 CDD:465209
CG44838NP_001287006.1 PHA03247 <67..230 CDD:223021 39/179 (22%)
Blue background indicates that the domain is not in the aligned region.

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