DRSC/TRiP Functional Genomics Resources

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Protein Alignment ckn and samsn1a

DIOPT Version :10

Sequence 1:NP_611009.1 Gene:ckn / 36673 FlyBaseID:FBgn0033987 Length:924 Species:Drosophila melanogaster
Sequence 2:NP_001122141.1 Gene:samsn1a / 336695 ZFINID:ZDB-GENE-030131-8639 Length:621 Species:Danio rerio


Alignment Length:363 Identity:81/363 - (22%)
Similarity:132/363 - (36%) Gaps:104/363 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 RLSGPLRHHQNHQADD---GISMSGSSI---VSSPSLEEGGFNLPRETSVALRLKDEVGGTSTAA 120
            :::||     |.:.|.   |:..|.:|:   .|..|...|.|:..|..:...:|  |..||    
Zfish   279 KINGP-----NMKRDSLPKGMMRSTTSVDFCASKRSTSFGRFDTFRNQNSPSKL--EENGT---- 332

  Fly   121 PTTGGPGGGGATVVGAPPPGAGKPGVAMVPPPPVFCATLREPLTHKAAVYYHQQLALQEDQGIDL 185
            |.|   .|..|..:...|...||...|:       ..|:|:.:..|..      .:..||...| 
Zfish   333 PET---EGDSAADISEKPRCLGKKMKAI-------SMTMRKRMGKKPV------KSCSEDMADD- 380

  Fly   186 TQSPGRDSPGSSSGSAGSGSRHSTASLDSGRASSYLTGVSSSGASIRAPLSSPRCSSVSSCSIGS 250
              :.|....||:...:...:.:|..||.||::||...||:||             |.|||     
Zfish   381 --TEGETENGSAVEKSSDRTSNSLESLYSGQSSSSSGGVASS-------------SDVSS----- 425

  Fly   251 VDRQRNDELIIDWLLEMKHEEYAQL-------------FIAAGYDLPTIARMTPEDLTAI----- 297
                ..|.|        |.||.|..             |:.:.||..:: ::...|:.:|     
Zfish   426 ----NRDSL--------KLEEEALYTGQFCGRAKVHTDFVPSPYDTDSL-KLKVGDIISIISKPP 477

  Fly   298 -----GIKN--------------PHHRERIKQRIDKLQVLDNLPHFVPGSIEEWLQLLRLEEYIQ 343
                 |:.|              |...:..::...|::.:.......|.::.|.|:.|.||||..
Zfish   478 MGIWTGMLNNKVGNFKFIYVDVLPEKEKEQEEEAPKIRPMKVCKKPRPNTLLELLERLHLEEYAS 542

  Fly   344 PLLEQNYKTVRDVTQVTWEDLEDIGIVKLGHQKKILLA 381
            .||...|:||.|:..:....|.::.:....|:.::|.|
Zfish   543 SLLLNGYQTVDDLRHLKERHLIELNVTDPEHRHRLLAA 580

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cknNP_611009.1 SAM_caskin1,2_repeat1 254..319 CDD:188896 15/101 (15%)
SAM_caskin1,2_repeat2 320..390 CDD:188897 18/62 (29%)
Caskin-tail <887..912 CDD:465209
samsn1aNP_001122141.1 SLY 307..442 CDD:463602 46/189 (24%)
SH3_SASH_like 445..496 CDD:212756 7/51 (14%)
SAM_superfamily 521..584 CDD:472832 18/60 (30%)
Blue background indicates that the domain is not in the aligned region.

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