DRSC/TRiP Functional Genomics Resources

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Protein Alignment ckn and Sash3

DIOPT Version :10

Sequence 1:NP_611009.1 Gene:ckn / 36673 FlyBaseID:FBgn0033987 Length:924 Species:Drosophila melanogaster
Sequence 2:XP_006257592.1 Gene:Sash3 / 317578 RGDID:1560293 Length:381 Species:Rattus norvegicus


Alignment Length:435 Identity:87/435 - (20%)
Similarity:144/435 - (33%) Gaps:126/435 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 SGPLRHHQNHQADDGISMSGSSIVSSPSLEEGGFNLPRETSVAL--------------RLKDEVG 114
            |.|:...:....||.|....|.:::.....:.|..|.::....:              .|.:|:|
  Rat    37 SSPVVSEKEFNLDDNIPEDDSGVLTPEDSGKSGKKLGKKWRAVISRTMNRKMGKMMVKALSEEMG 101

  Fly   115 GT---STAAPTTGGPGGGGATVVGAPPPGAGKPGVAMVPPPPVFCATLREPLTHKAAVYYHQQLA 176
            .|   .:|:||:..        .....||..|..:|...|..      ||.|.          |:
  Rat   102 DTLEEGSASPTSPD--------CSLDSPGPEKMALAFSEPEE------RELLA----------LS 142

  Fly   177 LQEDQGIDLTQSPGRDSPGSSSGSAGSGSRHSTASLDSGRASSYLTGVSSSGASIRAPLSSPRCS 241
            .|...|.:|.      |||..|||          .::...|..| ||.....|.:....:.    
  Rat   143 RQTSTGSELC------SPGPGSGS----------FIEESPAPQY-TGPFCGRARVHTDFTP---- 186

  Fly   242 SVSSCSIGSVDRQRNDEL-IID------W--LLEMKHEEYAQLFIAAGYDLPTIARMTPEDLTAI 297
              |.....|:..|:.|.: ||:      |  ||..|...:..:::          .:.||:  |:
  Rat   187 --SPYDHDSLKLQKGDVIQIIEKPPVGTWLGLLNGKLGSFKFIYV----------DVLPEE--AV 237

  Fly   298 GIKNPHHRERIKQRIDKLQVLDNLPHFVPGSIEEWLQLLRLEEYIQPLLEQNYKTVRDVTQVTWE 362
            |...|..|:...:|          |.  |.::.|.|:.:.|||:...||...|:|:.|..::...
  Rat   238 GPVRPSRRQSKSKR----------PK--PKTLHELLERIGLEEHTSTLLLNGYQTLEDFKELRET 290

  Fly   363 DLEDIGIVKLGHQKKILLAIKRVKDIISGKWNPGGANAYQQQEYQRKPWQFNVPIPSTPSYVPTT 427
            .|.::.|:...|:.|:|.|.:.:.|..:.    |...|.:..|..::|....|..|..       
  Rat   291 HLNELNIMDPQHRAKLLTAAELLLDYDTA----GSEEAEEGAESSQEPALHTVSEPKV------- 344

  Fly   428 RVSWDDTKIYATSSVLNSTAPSGSSCLNSSLANGDAYYCTGSNHE 472
                              ..|..|.|...|.:..|....||:..:
  Rat   345 ------------------DIPRDSGCFEGSESGRDEAELTGTEEQ 371

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cknNP_611009.1 SAM_caskin1,2_repeat1 254..319 CDD:188896 15/73 (21%)
SAM_caskin1,2_repeat2 320..390 CDD:188897 19/69 (28%)
Caskin-tail <887..912 CDD:465209
Sash3XP_006257592.1 SLY 21..174 CDD:463602 37/177 (21%)
SH3_SASH3 176..231 CDD:212901 11/70 (16%)
SAM_superfamily 250..317 CDD:472832 20/78 (26%)
Blue background indicates that the domain is not in the aligned region.

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