DRSC/TRiP Functional Genomics Resources

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Protein Alignment ckn and Samsn1

DIOPT Version :10

Sequence 1:NP_611009.1 Gene:ckn / 36673 FlyBaseID:FBgn0033987 Length:924 Species:Drosophila melanogaster
Sequence 2:NP_570834.2 Gene:Samsn1 / 170637 RGDID:620926 Length:372 Species:Rattus norvegicus


Alignment Length:406 Identity:79/406 - (19%)
Similarity:146/406 - (35%) Gaps:121/406 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 GGFNLPRETSV-----ALRLKD-EVGGTSTAAPTTGGPGGGGATVVGAPPPGAGKPGVAMVPPPP 153
            |.|:..|..|:     ::.::| |:...|.....|...||.....|.|                 
  Rat    25 GNFDRFRNNSISKSDDSIEVRDGELTNGSEEQSKTSNNGGSLGKKVRA----------------- 72

  Fly   154 VFCATLREPLTHKAAVYYHQQLALQEDQGIDLTQSPGRDSP---GSSSGSAGSGSRHSTASLDSG 215
             ...|:::.:..|    |.:.|:.::::.|.......|:|.   |:.:......:..|..||.||
  Rat    73 -ISWTMKKKVGKK----YIKALSEEKEEEIREETLQYRNSDPMIGTRTEKISLKASDSMDSLYSG 132

  Fly   216 RASSYLTGVS--SSGASIR--------APLSSPRCS--------SVSSCSIGSVDRQRNDELIID 262
            ::||  :|::  |.|.|.|        :|.|.|.|.        :.|.....|:..::.|  |||
  Rat   133 QSSS--SGITNCSDGTSNRDSFRLDDDSPYSGPFCGRARVHTDFTPSPYDTDSLKIKKGD--IID 193

  Fly   263 ---------W--LLEMKHEEYAQLFIAAGYDLPTIARMTPEDLTAIGIKNPHHRERIKQRIDKLQ 316
                     |  :|..|...:..:::..         ::.|:.....:|.|....|         
  Rat   194 IICKTPMGMWTGMLNNKVGNFKFIYVDV---------ISEEEAAPKKVKVPRSSRR--------- 240

  Fly   317 VLDNLPHFVPGSIEEWLQLLRLEEYIQPLLEQNYKTVRDVTQVTWEDLEDIGIVKLGHQKKILLA 381
              :|     |.:::|:|:.:.|:||....|...|:.:.|:..:....|.::.|.....:.::|.|
  Rat   241 --EN-----PQTLQEFLERIHLQEYTSAFLLNGYEALDDLKDIKESHLIELNIANPEDRARLLSA 298

  Fly   382 IKRVKDIISGKWNPGGANAYQQQEYQRKPWQFNVPIPSTPSYVPTTRVSWDDTKIYATSSVLNST 446
            .:.:.|            .....|::.:|    ||:.|.|..:..:::  ||             
  Rat   299 AESLLD------------EETAAEHEEEP----VPLSSNPDILSESQL--DD------------- 332

  Fly   447 APSGSSCLNSSLANGD 462
            .|..|.|..|| .|.|
  Rat   333 CPRDSGCYISS-GNSD 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cknNP_611009.1 SAM_caskin1,2_repeat1 254..319 CDD:188896 11/75 (15%)
SAM_caskin1,2_repeat2 320..390 CDD:188897 15/69 (22%)
Caskin-tail <887..912 CDD:465209
Samsn1NP_570834.2 SLY 17..164 CDD:463602 34/162 (21%)
SH3 167..218 CDD:473055 9/52 (17%)
SAM_SAMSN1 239..304 CDD:188960 15/80 (19%)
Blue background indicates that the domain is not in the aligned region.

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