DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lap1 and AT1G69550

DIOPT Version :9

Sequence 1:NP_001188938.1 Gene:Lap1 / 36670 FlyBaseID:FBgn0033984 Length:849 Species:Drosophila melanogaster
Sequence 2:NP_564971.2 Gene:AT1G69550 / 843291 AraportID:AT1G69550 Length:1400 Species:Arabidopsis thaliana


Alignment Length:680 Identity:178/680 - (26%)
Similarity:284/680 - (41%) Gaps:182/680 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 EVIDKLDYSNTPLTDFPEVWQHERTLEELYLSTTRLQALPPQLFYCQGLRVLHVNS-NNLESIPQ 80
            :|:| |.|| :.|.:.|.:......||.:....:.|..||..:.....::.|.:.. ::|..:|.
plant   696 KVMD-LRYS-SHLKELPNLSTAINLLEMVLSDCSSLIELPSSIGNATNIKSLDIQGCSSLLKLPS 758

  Fly    81 AIGSLRQLQHLDL-NRNLIVNVPEEIKSCKHLTHLDL-------------------------SCN 119
            :||:|..|..||| ..:.:|.:|..|.:..:|..|||                         .|:
plant   759 SIGNLITLPRLDLMGCSSLVELPSSIGNLINLPRLDLMGCSSLVELPSSIGNLINLEAFYFHGCS 823

  Fly   120 SLQRLPDAITSLISLQELLLNE-TYLEFLPANFGRLVNLRILELR-LNNLMTLPKSMVRLINLQR 182
            ||..||.:|.:||||:.|.|.. :.|..:|::.|.|:||::|.|. .::|:.||.|:..||||::
plant   824 SLLELPSSIGNLISLKILYLKRISSLVEIPSSIGNLINLKLLNLSGCSSLVELPSSIGNLINLKK 888

  Fly   183 LDIGG-NEFTELPEVVGELKSLRELWI-DFNQIRRVSANIGKLRDLQHFEAN------------G 233
            ||:.| :...|||..:|.|.:|:||:: :.:.:..:.::||.|.:|:....:            |
plant   889 LDLSGCSSLVELPLSIGNLINLQELYLSECSSLVELPSSIGNLINLKTLNLSECSSLVELPSSIG 953

  Fly   234 NLLD-------------TLPSELSNWRNVEVLSI--CSNSLEAFPFSVGMLKSLVTFK-CESNGL 282
            ||::             .|||.:.|..|::.|.:  || ||...|.|:|.|.:|.|.. .|.:.|
plant   954 NLINLQELYLSECSSLVELPSSIGNLINLKKLDLSGCS-SLVELPLSIGNLINLKTLNLSECSSL 1017

  Fly   283 TELPDSISYLEQLEELVLSH-NKLIRLPSTIGMLRSLRFL-FADDNQLRQLP-----------DE 334
            .|||.||..|..|:||.||. :.|:.|||:||.|.:|:.| .:..:.|.:||           ..
plant  1018 VELPSSIGNLINLQELYLSECSSLVELPSSIGNLINLKKLDLSGCSSLVELPLSIGNLINLKTLN 1082

  Fly   335 LCSCQQLSVL--SVAN-----------NQLSALPQNIGNLSKMKVLNV------------VNNYI 374
            |..|..|..|  |:.|           :.|..||.:||||..:|.|::            :.|.|
plant  1083 LSGCSSLVELPSSIGNLNLKKLDLSGCSSLVELPSSIGNLINLKKLDLSGCSSLVELPLSIGNLI 1147

  Fly   375 N-------------ALPVSMLNLVNLTSMWLSDNQS--------QPLVPLQYLDASTKTQLTCFM 418
            |             .||.|:.||:||..::||:..|        ..|:.|:.||.:..|:|.  .
plant  1148 NLQELYLSECSSLVELPSSIGNLINLQELYLSECSSLVELPSSIGNLINLKKLDLNKCTKLV--S 1210

  Fly   419 LPQVTFKMNSIQAQQQAQEQYEFVYANQQQPHA----------SPSRRICFAEEATILSNAKAQP 473
            |||:...::.:.|  ::.|..|.:..:...|..          :...|....:.:|  ||....|
plant  1211 LPQLPDSLSVLVA--ESCESLETLACSFPNPQVWLKFIDCWKLNEKGRDIIVQTST--SNYTMLP 1271

  Fly   474 APNYPSFVAAPPTPTPDQMA--------------------------------GSVRL-------- 498
            ....|:|.....| |...:|                                |||.|        
plant  1272 GREVPAFFTYRAT-TGGSLAVKLNERHCRTSCRFKACILLVRKGDKIDCEEWGSVYLTVLEKQSG 1335

  Fly   499 ----MRSPTPYPKELRQMSKYVRQAQAATS 524
                :.|||.||.....:..:..:|:...|
plant  1336 RKYSLESPTLYPLLTEHLYTFEIEAKGVKS 1365

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lap1NP_001188938.1 LRR_RI <21..200 CDD:238064 62/208 (30%)
leucine-rich repeat 21..41 CDD:275380 5/19 (26%)
LRR_8 40..98 CDD:290566 15/59 (25%)
leucine-rich repeat 42..64 CDD:275380 5/21 (24%)
leucine-rich repeat 65..87 CDD:275380 6/22 (27%)
LRR_8 86..140 CDD:290566 22/79 (28%)
leucine-rich repeat 88..110 CDD:275380 7/22 (32%)
leucine-rich repeat 111..133 CDD:275380 11/46 (24%)
leucine-rich repeat 134..156 CDD:275380 7/22 (32%)
LRR_8 156..213 CDD:290566 23/59 (39%)
leucine-rich repeat 157..179 CDD:275380 8/22 (36%)
leucine-rich repeat 180..202 CDD:275380 9/22 (41%)
leucine-rich repeat 203..225 CDD:275380 6/22 (27%)
leucine-rich repeat 226..248 CDD:275380 8/46 (17%)
leucine-rich repeat 272..294 CDD:275380 10/22 (45%)
LRR_8 279..328 CDD:290566 21/50 (42%)
leucine-rich repeat 295..317 CDD:275380 12/22 (55%)
leucine-rich repeat 318..340 CDD:275380 7/33 (21%)
LRR_8 340..396 CDD:290566 25/93 (27%)
leucine-rich repeat 364..386 CDD:275380 10/46 (22%)
PDZ_signaling 770..846 CDD:238492
AT1G69550NP_564971.2 TIR 80..242 CDD:279864
AAA_16 254..372 CDD:289934
NB-ARC 258..510 CDD:279299
LRR_3 671..690 CDD:285026
leucine-rich repeat 695..718 CDD:275380 7/23 (30%)
leucine-rich repeat 719..741 CDD:275380 5/21 (24%)
leucine-rich repeat 742..765 CDD:275380 6/22 (27%)
leucine-rich repeat 766..789 CDD:275380 7/22 (32%)
leucine-rich repeat 790..813 CDD:275380 4/22 (18%)
leucine-rich repeat 814..837 CDD:275380 7/22 (32%)
LRR_RI 884..1132 CDD:238064 77/248 (31%)
leucine-rich repeat 886..909 CDD:275380 9/22 (41%)
leucine-rich repeat 910..933 CDD:275380 6/22 (27%)
leucine-rich repeat 934..957 CDD:275380 4/22 (18%)
leucine-rich repeat 958..981 CDD:275380 4/22 (18%)
leucine-rich repeat 982..1005 CDD:275380 9/23 (39%)
leucine-rich repeat 1006..1029 CDD:275380 10/22 (45%)
leucine-rich repeat 1030..1053 CDD:275380 12/22 (55%)
AMN1 1053..>1214 CDD:187754 41/162 (25%)
leucine-rich repeat 1054..1077 CDD:275380 5/22 (23%)
leucine-rich repeat 1078..1100 CDD:275380 6/21 (29%)
leucine-rich repeat 1101..1124 CDD:275380 7/22 (32%)
leucine-rich repeat 1125..1148 CDD:275380 3/22 (14%)
leucine-rich repeat 1149..1170 CDD:275380 3/20 (15%)
leucine-rich repeat 1173..1196 CDD:275380 5/22 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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