DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lap1 and AT3G15410

DIOPT Version :9

Sequence 1:NP_001188938.1 Gene:Lap1 / 36670 FlyBaseID:FBgn0033984 Length:849 Species:Drosophila melanogaster
Sequence 2:NP_001189901.1 Gene:AT3G15410 / 820780 AraportID:AT3G15410 Length:590 Species:Arabidopsis thaliana


Alignment Length:747 Identity:170/747 - (22%)
Similarity:270/747 - (36%) Gaps:234/747 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 LDYSN-----TPLT-DFP-------------EVWQHERTLEELYLSTTRLQALPPQLFYCQGLRV 67
            |:.||     .|:| |.|             |.|.....|::|.|:...::.|...|.....|.|
plant    14 LNLSNRSLNFDPITWDVPTEVYQCLETTGEGENWWEAVDLQKLILAHNDIEVLREDLKNLACLVV 78

  Fly    68 LHVNSNNLESIPQAIGSLRQLQHLDLNRNLIVNVPEEIKSCKHLTHLDLSCNSLQRLPDAITSLI 132
            |:|:.|.|..:|.|||.|..::.||::.|.|..:||:|.|...|..||.|.|.|:.|||:|    
plant    79 LNVSHNKLSQLPAAIGELTAMKSLDVSFNSISELPEQIGSAISLVKLDCSSNRLKELPDSI---- 139

  Fly   133 SLQELLLNETYLEFLPANFGRLVNLRILELRLNNLMTLPKSMVRLINLQRLDIGGNEFTELPEVV 197
                               ||.::|..|:...|.:.:||:.||....|.:||:.||:.|.|.|  
plant   140 -------------------GRCLDLSDLKATNNQISSLPEDMVNCSKLSKLDVEGNKLTALSE-- 183

  Fly   198 GELKSLRELWIDFNQIRRVSANIGKLRDLQHFEANGNLLDTLPSELSNWRNVEVLSICSNSLEAF 262
                                                       :.:::|..:..|:.|.|.|...
plant   184 -------------------------------------------NHIASWTMLAELNACKNMLGVL 205

  Fly   263 PFSVGMLKSLVTFKCESNGLTELPDSISYLEQLEELVLSHNKLIRLPSTIGMLRSLRFLFADDNQ 327
            |.::|.|..|:......|.::.:|.||.....|.|..|..|.|..||:.||.|..|..|....||
plant   206 PQNIGSLSRLIRLDLHQNKISSVPPSIGGCSSLVEFYLGINSLSTLPAEIGDLSRLGTLDLRSNQ 270

  Fly   328 LRQLPDELCSCQQLSVLSVANNQLSALPQNIGNLSKMKVLNVVNNYINALPVSMLNLVNLTSMWL 392
            |::.|...|.. :||.|.::||.|:.|...:||::.::.|.:|.|.:..|..|::|         
plant   271 LKEYPVGACKL-KLSYLDLSNNSLTGLHPELGNMTTLRKLVLVGNPLRTLRSSLVN--------- 325

  Fly   393 SDNQSQPLVPLQYLDASTKTQLTCFMLPQVTFKMNSIQAQQQAQEQYEFVYANQQQPHASPSRRI 457
                ......|:||    :::|                             :|.::..||     
plant   326 ----GPTAALLKYL----RSRL-----------------------------SNSEETSAS----- 348

  Fly   458 CFAEEATILSNAKAQPAPNYPSFVAAPPTPTPDQMAGSVRLMRSPTPYPKELRQMSKYVRQAQAA 522
                                        |||.:.:..|...|...:   |||        ..:..
plant   349 ----------------------------TPTKENVIASAARMSISS---KEL--------SLEGL 374

  Fly   523 TSSANASEVREARVVTNGQIHCDSNNANQDVVDQATTSAIYGIAPETTHI--YGVYQQPQQMAHP 585
            ..|...|||.|:..:|...:   |.|:.:::..|.:||    ::.:|..:  ..:...|..:...
plant   375 NLSDVPSEVWESGEITKVNL---SKNSIEELPAQLSTS----VSLQTLILSRNKIKDWPGAILKS 432

  Fly   586 VPTQEYYGLPLVNYEAHYQQLYVEANTPLPTTHLNGDQ---DYELQPLQQQPMQQQALP----TP 643
            :|......|.               |.||....|:|.|   ..::..|....:..:..|    .|
plant   433 LPNLMCLKLD---------------NNPLNQIPLDGFQVVSGLQILDLSVNAVSFREHPKFCHLP 482

  Fly   644 RLEPPPYHIARVYTKKTPED-LNLYESMRQRKQQQQLQEQTIYQDALNSNSNFKTTAIGAQDVEE 707
            :|.  ..:::|:...:.||| |||              ...|..| ||.|| .::...|.::: .
plant   483 QLR--ELYLSRIQLSEVPEDILNL--------------SNLIILD-LNQNS-LQSIPKGIKNM-T 528

  Fly   708 SVDQLDYQNNISNNLEP-----NPEEEDQELD 734
            |:..||..||..::|.|     .|..|...||
plant   529 SLKHLDISNNNISSLPPELGLLEPTLEVLRLD 560

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lap1NP_001188938.1 LRR_RI <21..200 CDD:238064 60/196 (31%)
leucine-rich repeat 21..41 CDD:275380 9/37 (24%)
LRR_8 40..98 CDD:290566 19/57 (33%)
leucine-rich repeat 42..64 CDD:275380 5/21 (24%)
leucine-rich repeat 65..87 CDD:275380 11/21 (52%)
LRR_8 86..140 CDD:290566 18/53 (34%)
leucine-rich repeat 88..110 CDD:275380 8/21 (38%)
leucine-rich repeat 111..133 CDD:275380 10/21 (48%)
leucine-rich repeat 134..156 CDD:275380 2/21 (10%)
LRR_8 156..213 CDD:290566 15/56 (27%)
leucine-rich repeat 157..179 CDD:275380 7/21 (33%)
leucine-rich repeat 180..202 CDD:275380 8/21 (38%)
leucine-rich repeat 203..225 CDD:275380 0/21 (0%)
leucine-rich repeat 226..248 CDD:275380 1/21 (5%)
leucine-rich repeat 272..294 CDD:275380 5/21 (24%)
LRR_8 279..328 CDD:290566 17/48 (35%)
leucine-rich repeat 295..317 CDD:275380 10/21 (48%)
leucine-rich repeat 318..340 CDD:275380 7/21 (33%)
LRR_8 340..396 CDD:290566 15/55 (27%)
leucine-rich repeat 364..386 CDD:275380 6/21 (29%)
PDZ_signaling 770..846 CDD:238492
AT3G15410NP_001189901.1 LRR_8 53..109 CDD:290566 19/55 (35%)
leucine-rich repeat 53..75 CDD:275380 5/21 (24%)
leucine-rich repeat 76..98 CDD:275380 11/21 (52%)
leucine-rich repeat 99..121 CDD:275380 8/21 (38%)
leucine-rich repeat 122..137 CDD:275380 7/14 (50%)
leucine-rich repeat 145..167 CDD:275380 7/21 (33%)
leucine-rich repeat 168..214 CDD:275380 16/90 (18%)
LRR_RI <202..424 CDD:238064 68/319 (21%)
LRR_8 213..271 CDD:290566 18/57 (32%)
leucine-rich repeat 215..237 CDD:275380 5/21 (24%)
leucine-rich repeat 238..260 CDD:275380 10/21 (48%)
LRR_8 259..316 CDD:290566 19/57 (33%)
leucine-rich repeat 261..282 CDD:275380 7/21 (33%)
leucine-rich repeat 306..359 CDD:275380 16/131 (12%)
LRR_RI 358..562 CDD:238064 55/255 (22%)
leucine-rich repeat 367..388 CDD:275380 8/28 (29%)
leucine-rich repeat 389..411 CDD:275380 6/28 (21%)
LRR_8 411..468 CDD:290566 11/71 (15%)
leucine-rich repeat 412..435 CDD:275380 2/22 (9%)
leucine-rich repeat 436..459 CDD:275380 7/37 (19%)
leucine-rich repeat 460..483 CDD:275380 2/22 (9%)
leucine-rich repeat 484..506 CDD:275380 8/37 (22%)
LRR_8 505..564 CDD:290566 18/59 (31%)
leucine-rich repeat 507..529 CDD:275380 7/24 (29%)
leucine-rich repeat 530..553 CDD:275380 6/22 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm3538
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.